RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 RAET1LQ5VY80 246 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 POU5F2Q8N7G0 328 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 SSC4DQ8WTU2 575 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 SLC38A5Q8WUX1 472 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 MAL2Q969L2 176 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 ARSGQ96EG1 525 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 TMEM19Q96HH6 336 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 DMRTA2Q96SC8 542 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 CGREF1Q99674 301 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 NPAS1Q99742 590 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 TP63Q9H3D4 680 aaPredicted RBP12.79□□□□□ -0.36
PTCH1-226ENST00000553011 HHATLQ9HCP6 504 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 ALKBH4Q9NXW9 302 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 L3MBTL1Q9Y468 752 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 GMEB1Q9Y692 573 aa12.79□□□□□ -0.36
PTCH1-226ENST00000553011 OR2M5A3KFT3 312 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 AGAP5A6NIR3 686 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 CLDN24A6NM45 220 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 FIGNL2A6NMB9 653 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 E9PLN8 166 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 ZNF264O43296 627 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 CCDC22O60826 627 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 ACTL6AO96019 429 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 UBL4AP11441 157 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 GPX2P18283 190 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 PPIBP23284 216 aaKnown RBP12.78□□□□□ -0.36
PTCH1-226ENST00000553011 ACVR2AP27037 513 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 ADSLP30566 484 aaPredicted RBP12.78□□□□□ -0.36
PTCH1-226ENST00000553011 GCKP35557 465 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 PER3P56645 1201 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 ADORA2A-AS1P86434 159 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 CAPRIN1Q14444 709 aaKnown RBP12.78□□□□□ -0.36
PTCH1-226ENST00000553011 FGFBP1Q14512 234 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 MAPRE2Q15555 327 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 GCNT6Q5T4J0 391 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 REP15Q6BDI9 236 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 RTL6Q6ICC9 239 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 MTDHQ86UE4 582 aaKnown RBP12.78□□□□□ -0.36
PTCH1-226ENST00000553011 ULK2Q8IYT8 1036 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 MARVELD2Q8N4S9 558 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 TMCO5AQ8N6Q1 288 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 WDYHV1Q96HA8 205 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 ANKRD27Q96NW4 1050 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 VKORC1Q9BQB6 163 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 SLC39A3Q9BRY0 314 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 PRDM14Q9GZV8 571 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 MED17Q9NVC6 651 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 THUMPD1Q9NXG2 353 aaKnown RBP12.78□□□□□ -0.36
PTCH1-226ENST00000553011 SUCOQ9UBS9 1254 aaKnown RBP12.78□□□□□ -0.36
PTCH1-226ENST00000553011 ICAM5Q9UMF0 924 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 CAMK2AQ9UQM7 478 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 FAM215AQ9Y5M1 114 aa12.78□□□□□ -0.36
PTCH1-226ENST00000553011 WIPF3A6NGB9 483 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 EVPLLA8MZ36 301 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 KDM4EB2RXH2 506 aaPredicted RBP12.77□□□□□ -0.37
PTCH1-226ENST00000553011 MRASO14807 208 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 SLC22A2O15244 555 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 EIF4E2O60573 245 aaKnown RBP12.77□□□□□ -0.37
PTCH1-226ENST00000553011 WDR1O75083 606 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 CYP7B1O75881 506 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 NUDT14O95848 222 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 CSTAP01040 98 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 UBTFL6P0CB48 400 aaPredicted RBP12.77□□□□□ -0.37
PTCH1-226ENST00000553011 ARAFP10398 606 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 RPS4Y1P22090 263 aaKnown RBP12.77□□□□□ -0.37
PTCH1-226ENST00000553011 CHMP24386 653 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 ADH7P40394 386 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 LHX2P50458 406 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 P2RX1P51575 399 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 CCR4P51679 360 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 ZNF41P51814 821 aaPredicted RBP12.77□□□□□ -0.37
PTCH1-226ENST00000553011 CRISP3P54108 245 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 MTPNP58546 118 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 PLAURQ03405 335 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 SRYQ05066 204 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 SKP2Q13309 424 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 CYLC2Q14093 348 aaPredicted RBP12.77□□□□□ -0.37
PTCH1-226ENST00000553011 TOMM34Q15785 309 aaPredicted RBP12.77□□□□□ -0.37
PTCH1-226ENST00000553011 TMEM44Q2T9K0 475 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 TRMT5Q32P41 509 aaKnown RBP12.77□□□□□ -0.37
PTCH1-226ENST00000553011 PLPPR5Q32ZL2 321 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 MMEL1Q495T6 779 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 GLYR1Q49A26 553 aaPredicted RBP12.77□□□□□ -0.37
PTCH1-226ENST00000553011 EIF3MQ7L2H7 374 aaKnown RBP12.77□□□□□ -0.37
PTCH1-226ENST00000553011 TREML1Q86YW5 311 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 GPR119Q8TDV5 335 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 ZNF524Q96C55 264 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 TREX2Q9BQ50 279 aaPredicted RBP12.77□□□□□ -0.37
PTCH1-226ENST00000553011 CCDC106Q9BWC9 280 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 LAT2Q9GZY6 243 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 MTHFD2LQ9H903 347 aaPredicted RBP12.77□□□□□ -0.37
PTCH1-226ENST00000553011 A4GALTQ9NPC4 353 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.77□□□□□ -0.37
PTCH1-226ENST00000553011 CALML5Q9NZT1 146 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 CORO2BQ9UQ03 480 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 ZNF337Q9Y3M9 751 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 DSPPQ9NZW4 1301 aa12.77□□□□□ -0.37
PTCH1-226ENST00000553011 A0A087WZY1 265 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 TMEM247A6NEH6 219 aa12.76□□□□□ -0.37
PTCH1-226ENST00000553011 BBIP1A8MTZ0 92 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms