RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 CCDC106Q9BWC9 280 aa4.73□□□□□ -1.65
CLIP1-217ENST00000543205 ALOXE3Q9BYJ1 711 aa4.73□□□□□ -1.65
CLIP1-217ENST00000543205 NUF2Q9BZD4 464 aa4.73□□□□□ -1.65
CLIP1-217ENST00000543205 MEAF6Q9HAF1 191 aa4.73□□□□□ -1.65
CLIP1-217ENST00000543205 PNO1Q9NRX1 252 aaKnown RBP4.73□□□□□ -1.65
CLIP1-217ENST00000543205 MRPS18AQ9NVS2 196 aaKnown RBP4.73□□□□□ -1.65
CLIP1-217ENST00000543205 FAM53CQ9NYF3 392 aa4.73□□□□□ -1.65
CLIP1-217ENST00000543205 FBXL4Q9UKA2 621 aa4.73□□□□□ -1.65
CLIP1-217ENST00000543205 PSME2Q9UL46 239 aa4.73□□□□□ -1.65
CLIP1-217ENST00000543205 EIF3LQ9Y262 564 aaKnown RBP4.73□□□□□ -1.65
CLIP1-217ENST00000543205 DLGAP4Q9Y2H0 992 aa4.73□□□□□ -1.65
CLIP1-217ENST00000543205 HS3ST3B1Q9Y662 390 aa4.73□□□□□ -1.65
CLIP1-217ENST00000543205 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.73□□□□□ -1.65
CLIP1-217ENST00000543205 SCN3AQ9NY46 2000 aa4.73□□□□□ -1.65
CLIP1-217ENST00000543205 ZNF462Q96JM2 2506 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 LOC102723996A0A087X1L8 192 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 IGHV1-45A0A0A0MS14 117 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 NSG1A0A0A6YYJ2 146 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 MYOCOSA0A1B0GUC4 107 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 C1orf226A1L170 272 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 A8MUA0 341 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 TCP11X1B4DZS4 312 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 PRKRAO75569 313 aaKnown RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 HPP00738 406 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 JUNP05412 331 aaKnown RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 IL3P08700 152 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 COX7A2P14406 83 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 TNNI3P19429 210 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 PIK3R1P27986 724 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 BMXP51813 675 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 HNRNPFP52597 415 aaKnown RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 TIRAPP58753 221 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 CTXN1P60606 82 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 ID2Q02363 134 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 FOLH1Q04609 750 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 C2orf80Q0P641 193 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 BIKQ13323 160 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 RIPK1Q13546 671 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 HEPACAMQ14CZ8 416 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 KIAA0040Q15053 153 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 COL28A1Q2UY09 1125 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 RFTN2Q52LD8 501 aaPredicted RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 CRB2Q5IJ48 1285 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 DCAF10Q5QP82 559 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 C6orf136Q5SQH8 315 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 IRAK1BP1Q5VVH5 260 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 CST9LP1Q5W188 147 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 LANCL3Q6ZV70 420 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 OR4N5Q8IXE1 308 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 CLEC1AQ8NC01 280 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 OR11G2Q8NGC1 345 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 OR4K14Q8NGD5 310 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 SNX33Q8WV41 574 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 APOBEC4Q8WW27 367 aaKnown RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 ANKRD9Q96BM1 317 aaPredicted RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 SPACA9Q96E40 222 aaPredicted RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 C11orf24Q96F05 449 aaPredicted RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 LPAR4Q99677 370 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 C1orf50Q9BV19 199 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 ING2Q9H160 280 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 WNT5BQ9H1J7 359 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 PRORYQ9H606 182 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 COQ10BQ9H8M1 238 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 ZNF160Q9HCG1 818 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 SLCO1B3Q9NPD5 702 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 POLE3Q9NRF9 147 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 TEX10Q9NXF1 929 aaPredicted RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 PPP1R14DQ9NXH3 145 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 FBXL17Q9UF56 701 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 SLC45A2Q9UMX9 530 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 WBP11Q9Y2W2 641 aaKnown RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 USH1CQ9Y6N9 552 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 CAPN7Q9Y6W3 813 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 USP9XQ93008 2570 aaPredicted RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 SEC16AO15027 2179 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 IGKV3D-11A0A0A0MRZ8 115 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 IGHV3-20A0A0C4DH32 117 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 GOLGA8QA0A0J9YX86 632 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 GOLGA8OA6NCC3 632 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 GOLGA8NF8WBI6 632 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 FGF17O60258 216 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 OR10H2O60403 315 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 AKR7A3O95154 331 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 GPR75O95800 540 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 VIMP08670 466 aaKnown RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 PRPS2P11908 318 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 COX6A1P12074 109 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 ICAM2P13598 275 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 LBPP18428 481 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 ITGA3P26006 1051 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 MDH1P40925 334 aaKnown RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 CCL11P51671 97 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 XKP51811 444 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 EFNA3P52797 238 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 ERVK-8P63133 956 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 POU6F2P78424 691 aaPredicted RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 PRR5P85299 388 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 EMX2Q04743 252 aa4.72□□□□□ -1.65
CLIP1-217ENST00000543205 DBPQ10586 325 aaPredicted RBP4.72□□□□□ -1.65
CLIP1-217ENST00000543205 FHL3Q13643 280 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms