RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 ACKR1Q16570 336 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 EXOSC6Q5RKV6 272 aaKnown RBP11.76□□□□□ -0.53
RTN3-212ENST00000543123 CCNJQ5T5M9 372 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 EMBQ6PCB8 327 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 BEND4Q6ZU67 534 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 LILRA2Q8N149 483 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 WFDC11Q8NEX6 87 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 OR7A2PQ8NGA2 310 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 OR2W6PQ8NHA6 318 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 PPP1R14CQ8TAE6 165 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 PHOSPHO1Q8TCT1 267 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 TCP10LQ8TDR4 215 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 CDS1Q92903 461 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 CPNE4Q96A23 557 aaPredicted RBP11.76□□□□□ -0.53
RTN3-212ENST00000543123 TUBGCP3Q96CW5 907 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 OTUB1Q96FW1 271 aaPredicted RBP11.76□□□□□ -0.53
RTN3-212ENST00000543123 POM121Q96HA1 1249 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 ADGRG7Q96K78 797 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 C18orf12Q96KH6 178 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 KLHL15Q96M94 604 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 CCL19Q99731 98 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 BHLHE41Q9C0J9 482 aaPredicted RBP11.76□□□□□ -0.53
RTN3-212ENST00000543123 UBTD1Q9HAC8 227 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 SIRT3Q9NTG7 399 aaPredicted RBP11.76□□□□□ -0.53
RTN3-212ENST00000543123 SLC17A7Q9P2U7 560 aa11.76□□□□□ -0.53
RTN3-212ENST00000543123 A0A1W2PPR1 153 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 GTPBP1O00178 669 aaKnown RBP11.75□□□□□ -0.53
RTN3-212ENST00000543123 CFLARO15519 480 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 SPAG7O75391 227 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 SLU7O95391 586 aaKnown RBP11.75□□□□□ -0.53
RTN3-212ENST00000543123 LINGO3P0C6S8 592 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 LAMP1P11279 417 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 PSMA4P25789 261 aaKnown RBP11.75□□□□□ -0.53
RTN3-212ENST00000543123 SLC6A8P48029 635 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 CARD18P57730 90 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 PTGR1Q14914 329 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 RNPS1Q15287 305 aaKnown RBP11.75□□□□□ -0.53
RTN3-212ENST00000543123 CTU2Q2VPK5 515 aaKnown RBP11.75□□□□□ -0.53
RTN3-212ENST00000543123 BEX5Q5H9J7 111 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 C6orf136Q5SQH8 315 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 DCST2Q5T1A1 773 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 IL23RQ5VWK5 629 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 ZCCHC23Q6ZST2 131 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 ZNF550Q7Z398 422 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 ZAR1Q86SH2 424 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 CXorf67Q86X51 503 aaPredicted RBP11.75□□□□□ -0.53
RTN3-212ENST00000543123 KIRREL3Q8IZU9 778 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 COQ8BQ96D53 544 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 ZC3HAV1LQ96H79 300 aaKnown RBP11.75□□□□□ -0.53
RTN3-212ENST00000543123 ZIM3Q96PE6 472 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 TACO1Q9BSH4 297 aaKnown RBP11.75□□□□□ -0.53
RTN3-212ENST00000543123 C1orf50Q9BV19 199 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 OR10A4Q9H209 315 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 TMEM185BQ9H7F4 350 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 ANKZF1Q9H8Y5 726 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 GP6Q9HCN6 339 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 CLEC4AQ9UMR7 237 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 ACTL7BQ9Y614 415 aa11.75□□□□□ -0.53
RTN3-212ENST00000543123 GPC6Q9Y625 555 aaPredicted RBP11.75□□□□□ -0.53
RTN3-212ENST00000543123 DUXAA6NLW8 204 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 SIAH2O43255 324 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 SKAP2O75563 359 aaPredicted RBP11.74□□□□□ -0.53
RTN3-212ENST00000543123 SNUPNO95149 360 aaKnown RBP11.74□□□□□ -0.53
RTN3-212ENST00000543123 C6orf47O95873 294 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 AK1P00568 194 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 BPGMP07738 259 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 INHBBP09529 407 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 AGTR1P30556 359 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 SFTPDP35247 375 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 SOAT1P35610 550 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 P2RX1P51575 399 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 ATP12AP54707 1039 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 C21orf58P58505 322 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 VSNL1P62760 191 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 ZNF117Q03924 483 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 FOXF1Q12946 379 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 CD226Q15762 336 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 ZNF239Q16600 458 aaKnown RBP11.74□□□□□ -0.53
RTN3-212ENST00000543123 SMU1Q2TAY7 513 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 KLHL26Q53HC5 615 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 Q5PR19 223 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 TMEM201Q5SNT2 666 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 PRSS57Q6UWY2 283 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 TOR1AIP2Q8NFQ8 470 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 OSTF1Q92882 214 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 DUSP26Q9BV47 211 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 CXorf36Q9H7Y0 433 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 FBXO34Q9NWN3 711 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 NOP53Q9NZM5 478 aaKnown RBP11.74□□□□□ -0.53
RTN3-212ENST00000543123 GIMAP2Q9UG22 337 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 GPR52Q9Y2T5 361 aa11.74□□□□□ -0.53
RTN3-212ENST00000543123 A0A0J9YW62 118 aa11.73□□□□□ -0.53
RTN3-212ENST00000543123 TMCC2O75069 709 aa11.73□□□□□ -0.53
RTN3-212ENST00000543123 UBL4AP11441 157 aa11.73□□□□□ -0.53
RTN3-212ENST00000543123 PSMB1P20618 241 aaKnown RBP11.73□□□□□ -0.53
RTN3-212ENST00000543123 SLC7A1P30825 629 aa11.73□□□□□ -0.53
RTN3-212ENST00000543123 SELENBP1Q13228 472 aa11.73□□□□□ -0.53
RTN3-212ENST00000543123 CBFBQ13951 182 aa11.73□□□□□ -0.53
RTN3-212ENST00000543123 ANKRD34AQ69YU3 496 aa11.73□□□□□ -0.53
RTN3-212ENST00000543123 STAC2Q6ZMT1 411 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms