RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 FOXD3Q9UJU5 478 aaPredicted RBP11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 ACAD8Q9UKU7 415 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 OR10H1Q9Y4A9 318 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 PCDHGB3Q9Y5G1 929 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 HEATR5AQ86XA9 2040 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 DOCK7Q96N67 2140 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 ABCA1O95477 2261 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 TRBV5-3A0A0A0MS03 114 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 C2orf92A0A1B0GVN3 265 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 TTC36A6NLP5 189 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 HSPB2A8KAH6 182 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 C5orf58C9J3I9 102 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 DNAJA2O60884 412 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 SOX30O94993 753 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 TCN1P20061 433 aaPredicted RBP11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 BMP5P22003 454 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 KRT20P35900 424 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 CPOXP36551 454 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 MAGEA5P43359 124 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 MAGEA8P43361 318 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 GPR143P51810 404 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 EEFSECP57772 596 aaKnown RBP11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 HPCAP84074 193 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 PLGLB1Q02325 96 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 LIPEQ05469 1076 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 FOXO1Q12778 655 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 SELPLGQ14242 412 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 RGNQ15493 299 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 HSPB2Q16082 182 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 HYAL4Q2M3T9 481 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 HSDL2Q6YN16 418 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 C16orf62Q7Z3J2 963 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 SLC22A16Q86VW1 577 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 SLC44A2Q8IWA5 706 aaPredicted RBP11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 SLC15A3Q8IY34 581 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 ZNF321PQ8N8H1 164 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 COX18Q8N8Q8 333 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 OR5L2Q8NGL0 311 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 GPR151Q8TDV0 419 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 XAGE5Q8WWM1 108 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 OTUB1Q96FW1 271 aaPredicted RBP11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 C16orf58Q96GQ5 468 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 RAB3IPQ96QF0 476 aaPredicted RBP11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 OR7D2Q96RA2 312 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 ITPAQ9BY32 194 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 ALG2Q9H553 416 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 Q9N2J8 555 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 THUMPD1Q9NXG2 353 aaKnown RBP11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 NTMQ9P121 344 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 SPRR3Q9UBC9 169 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 ZNF639Q9UID6 485 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 PPIEQ9UNP9 301 aaKnown RBP11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 ERVK-11Q9UQG0 969 aa11.36□□□□□ -0.59
CLSTN3-208ENST00000538933 RAI1Q7Z5J4 1906 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 KDM4EB2RXH2 506 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 ACOT7O00154 380 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 NME4O00746 187 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 DVL2O14641 736 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 PRKNO60260 465 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 CIB2O75838 187 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 ZFAND5O76080 213 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 F12P00748 615 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 OR12D1P0DN82 309 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 NR2F1P10589 423 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 ETFAP13804 333 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 GABRA1P14867 456 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 HOXB9P17482 250 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 GPX2P18283 190 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 S1PR1P21453 382 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 GABRA3P34903 492 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 SLC37A1P57057 533 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 GNA13Q14344 377 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 POU4F3Q15319 338 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 GPAT3Q53EU6 434 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 COX20Q5RI15 118 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 WLSQ5T9L3 541 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 HMBOX1Q6NT76 420 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 C8orf82Q6P1X6 216 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 ERICH5Q6P6B1 374 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 SERPINA11Q86U17 422 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 FAM109AQ8N4B1 249 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 RNF148Q8N7C7 305 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 ZNF615Q8N8J6 731 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 OR2T12Q8NG77 320 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 OR5D16Q8NGK9 328 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 RAB8BQ92930 207 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 SARAFQ96BY9 339 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 SPATA9Q9BWV2 254 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 MMADHCQ9H3L0 296 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 CACYBPQ9HB71 228 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 GPATCH2Q9NW75 528 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 CMTM6Q9NX76 183 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 ALKBH4Q9NXW9 302 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 TMEM181Q9P2C4 612 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 P2RX2Q9UBL9 471 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 ZNF629Q9UEG4 869 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 MRTO4Q9UKD2 239 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 PACSIN3Q9UKS6 424 aa11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 YARS2Q9Y2Z4 477 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-208ENST00000538933 NINQ8N4C6 2090 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms