RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 EXOSC7Q15024 291 aaKnown RBP12.22□□□□□ -0.45
LDLR-203ENST00000535915 ZNF322Q6U7Q0 402 aaPredicted RBP12.22□□□□□ -0.45
LDLR-203ENST00000535915 GATAD2AQ86YP4 633 aa12.22□□□□□ -0.45
LDLR-203ENST00000535915 GID4Q8IVV7 300 aa12.22□□□□□ -0.45
LDLR-203ENST00000535915 UBE2J2Q8N2K1 259 aa12.22□□□□□ -0.45
LDLR-203ENST00000535915 TMEM52Q8NDY8 209 aa12.22□□□□□ -0.45
LDLR-203ENST00000535915 OR5T3Q8NGG3 340 aa12.22□□□□□ -0.45
LDLR-203ENST00000535915 ZFPM2Q8WW38 1151 aa12.22□□□□□ -0.45
LDLR-203ENST00000535915 PATE1Q8WXA2 126 aa12.22□□□□□ -0.45
LDLR-203ENST00000535915 ART5Q96L15 291 aa12.22□□□□□ -0.45
LDLR-203ENST00000535915 TBX5Q99593 518 aa12.22□□□□□ -0.45
LDLR-203ENST00000535915 COQ7Q99807 217 aa12.22□□□□□ -0.45
LDLR-203ENST00000535915 C11orf54Q9H0W9 315 aaPredicted RBP12.22□□□□□ -0.45
LDLR-203ENST00000535915 ISG20L2Q9H9L3 353 aaKnown RBP12.22□□□□□ -0.45
LDLR-203ENST00000535915 LYRM4Q9HD34 91 aa12.22□□□□□ -0.45
LDLR-203ENST00000535915 WDR70Q9NW82 654 aa12.22□□□□□ -0.45
LDLR-203ENST00000535915 KCNE5Q9UJ90 142 aa12.22□□□□□ -0.45
LDLR-203ENST00000535915 C2orf92A0A1B0GVN3 265 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 ZC3H12DA2A288 527 aaKnown RBP12.21□□□□□ -0.45
LDLR-203ENST00000535915 MEIOCA2RUB1 952 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 SYNDIG1LA6NDD5 238 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 C12orf71A8MTZ7 269 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 HPGDSO60760 199 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 ATP1B1P05026 303 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 SHC2P98077 582 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 ATAD3CQ5T2N8 411 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 CDRT4Q8N9R6 151 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 SUN5Q8TC36 379 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 BRIX1Q8TDN6 353 aaKnown RBP12.21□□□□□ -0.45
LDLR-203ENST00000535915 KIAA1143Q96AT1 154 aaPredicted RBP12.21□□□□□ -0.45
LDLR-203ENST00000535915 ARSGQ96EG1 525 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 MRGPRX1Q96LB2 322 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 HS6ST2Q96MM7 605 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 PHOX2BQ99453 314 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 ENKD1Q9H0I2 346 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 CAPN10Q9HC96 672 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 MALT1Q9UDY8 824 aa12.21□□□□□ -0.45
LDLR-203ENST00000535915 CEP290O15078 2479 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 CDHR4A6H8M9 788 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 AGRPO00253 132 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 RPS4Y1P22090 263 aaKnown RBP12.21□□□□□ -0.46
LDLR-203ENST00000535915 APEX1P27695 318 aaKnown RBP12.21□□□□□ -0.46
LDLR-203ENST00000535915 CTHP32929 405 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 FXYD6P3P58550 94 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 HYAL1Q12794 435 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 ALG11Q2TAA5 492 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 KLHL12Q53G59 568 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 NIPAL3Q6P499 406 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 CNIH2Q6PI25 160 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 RNF113BQ8IZP6 322 aaKnown RBP12.21□□□□□ -0.46
LDLR-203ENST00000535915 ATF6BQ99941 703 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 PRDM9Q9NQV7 894 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 DUSP22Q9NRW4 184 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 DDX28Q9NUL7 540 aaKnown RBP12.21□□□□□ -0.46
LDLR-203ENST00000535915 CLDND1Q9NY35 253 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 ZNF223Q9UK11 482 aaPredicted RBP12.21□□□□□ -0.46
LDLR-203ENST00000535915 SATB2Q9UPW6 733 aa12.21□□□□□ -0.46
LDLR-203ENST00000535915 SHISA3A0PJX4 238 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 IDH3BO43837 385 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 RFX3P48380 749 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 TFF2Q03403 129 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 DBPQ10586 325 aaPredicted RBP12.2□□□□□ -0.46
LDLR-203ENST00000535915 SHHQ15465 462 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 WDR45BQ5MNZ6 344 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 VASNQ6EMK4 673 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 RFPL4BQ6ZWI9 263 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 MEPCEQ7L2J0 689 aaKnown RBP12.2□□□□□ -0.46
LDLR-203ENST00000535915 CDK20Q8IZL9 346 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 ACBD7Q8N6N7 88 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 DNAJA4Q8WW22 397 aaPredicted RBP12.2□□□□□ -0.46
LDLR-203ENST00000535915 NKX2-4Q9H2Z4 354 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 EVA1BQ9NVM1 165 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 NDRG2Q9UN36 371 aaKnown RBP12.2□□□□□ -0.46
LDLR-203ENST00000535915 A0A087WV62 115 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 A8MV72 311 aaPredicted RBP12.2□□□□□ -0.46
LDLR-203ENST00000535915 C2orf74A8MZ97 194 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 J3QRE1 110 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 BHLHE40O14503 412 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 TNFRSF10CO14798 259 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 PLOD3O60568 738 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 GPR75O95800 540 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 CSF2P04141 144 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 SAGP10523 405 aaPredicted RBP12.2□□□□□ -0.46
LDLR-203ENST00000535915 SLC2A2P11168 524 aaPredicted RBP12.2□□□□□ -0.46
LDLR-203ENST00000535915 GABRA3P34903 492 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 LSSP48449 732 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 SLC16A1P53985 500 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 ILF3Q12906 894 aaKnown RBP eCLIP12.2□□□□□ -0.468e-8■■■□□ 17.5
LDLR-203ENST00000535915 FZD5Q13467 585 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 IL18Q14116 193 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 PRICKLE4Q2TBC4 344 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 EOGTQ5NDL2 527 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 TMEM184AQ6ZMB5 413 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 ZNF655Q8N720 491 aaPredicted RBP12.2□□□□□ -0.46
LDLR-203ENST00000535915 STACQ99469 402 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 ALG8Q9BVK2 526 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 IFT27Q9BW83 186 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 JAM3Q9BX67 310 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 FN3KQ9H479 309 aa12.2□□□□□ -0.46
LDLR-203ENST00000535915 ASB6Q9NWX5 421 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms