RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 FAM26EQ8N5C1 309 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 TCEANCQ8N8B7 351 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 ADIPOR1Q96A54 375 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 ARSGQ96EG1 525 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 RNF31Q96EP0 1072 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 Q96MT0 163 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 NUDT9Q9BW91 350 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 NXF5Q9H1B4 397 aaKnown RBP19.09■□□□□ 0.65
VPS28-209ENST00000528142 TMEM27Q9HBJ8 222 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 MKL2Q9ULH7 1088 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 CFL2Q9Y281 166 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 A0A0B4J2E0 115 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 A0A1B0GX12 115 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 EFCAB10A6NFE3 127 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 POLR1CO15160 346 aaPredicted RBP19.09■□□□□ 0.65
VPS28-209ENST00000528142 ST3GAL4Q11206 333 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 IRF3Q14653 427 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 TBCEQ15813 527 aaPredicted RBP19.09■□□□□ 0.65
VPS28-209ENST00000528142 TEX47Q8TBZ9 253 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 RAB2BQ8WUD1 216 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 ZFAND2BQ8WV99 257 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 TMEM239Q8WW34 195 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 SYNDIG1Q9H7V2 258 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 IL20Q9NYY1 176 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 WARS2Q9UGM6 360 aaKnown RBP19.09■□□□□ 0.65
VPS28-209ENST00000528142 RARRES3Q9UL19 164 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 R4GN57 208 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 ZNF318Q5VUA4 2279 aa19.08■□□□□ 0.65
VPS28-209ENST00000528142 FRG2CA6NGY1 282 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 SERINC4A6NH21 518 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 CDC42EP2O14613 210 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 LCKP06239 509 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 CLPPQ16740 277 aaPredicted RBP19.08■□□□□ 0.64
VPS28-209ENST00000528142 KLHL26Q53HC5 615 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 PWWP2BQ6NUJ5 590 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 SLC27A4Q6P1M0 643 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 SLC16A12Q6ZSM3 486 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 ANKRD13BQ86YJ7 626 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 STX19Q8N4C7 294 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 LSMEM1Q8N8F7 131 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 OR14A16Q8NHC5 309 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 DAZLQ92904 295 aaKnown RBP19.08■□□□□ 0.64
VPS28-209ENST00000528142 YIPF6Q96EC8 236 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 SLC7A5P2Q9GIP4 190 aa19.08■□□□□ 0.64
VPS28-209ENST00000528142 KRCC1Q9NPI7 259 aaPredicted RBP19.08■□□□□ 0.64
VPS28-209ENST00000528142 IL33O95760 270 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 SYPP08247 313 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 PIPP12273 146 aaPredicted RBP19.07■□□□□ 0.64
VPS28-209ENST00000528142 DAB2P98082 770 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 ZNF620Q6ZNG0 422 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 ZNF550Q7Z398 422 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 LSRQ86X29 649 aaPredicted RBP19.07■□□□□ 0.64
VPS28-209ENST00000528142 SLITRK4Q8IW52 837 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 CLDN22Q8N7P3 220 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 STT3BQ8TCJ2 826 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 FCGR1BQ92637 280 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 EFHD2Q96C19 240 aaPredicted RBP19.07■□□□□ 0.64
VPS28-209ENST00000528142 LCORQ96JN0 433 aaPredicted RBP19.07■□□□□ 0.64
VPS28-209ENST00000528142 TRIM2Q9C040 744 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 GPN2Q9H9Y4 310 aaPredicted RBP19.07■□□□□ 0.64
VPS28-209ENST00000528142 DNAJC27Q9NZQ0 273 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 GPR179Q6PRD1 2367 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 A0A1B0GWA3 101 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 AGRPO00253 132 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 CHP2O43745 196 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 TLX2O43763 284 aaPredicted RBP19.07■□□□□ 0.64
VPS28-209ENST00000528142 SCRG1O75711 98 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 ADRA2AP08913 450 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 PTNP21246 168 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 PRKCDQ05655 676 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 BCDIN3DQ7Z5W3 292 aaKnown RBP19.07■□□□□ 0.64
VPS28-209ENST00000528142 PFN4Q8NHR9 129 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 OIT3Q8WWZ8 545 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 OSTF1Q92882 214 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 ART5Q96L15 291 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 GTPBP2Q9BX10 602 aaKnown RBP19.07■□□□□ 0.64
VPS28-209ENST00000528142 CDCA4Q9BXL8 241 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 HOXD1Q9GZZ0 328 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 C20orf141Q9NUB4 165 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 ENPP5Q9UJA9 477 aa19.07■□□□□ 0.64
VPS28-209ENST00000528142 NUP210LQ5VU65 1888 aa19.06■□□□□ 0.64
VPS28-209ENST00000528142 TMX2-CTNND1H3BSU7 103 aa19.06■□□□□ 0.64
VPS28-209ENST00000528142 NTN3O00634 580 aaPredicted RBP19.06■□□□□ 0.64
VPS28-209ENST00000528142 NOL3O60936 208 aaKnown RBP19.06■□□□□ 0.64
VPS28-209ENST00000528142 ONECUT2O95948 504 aa19.06■□□□□ 0.64
VPS28-209ENST00000528142 MAKP20794 623 aa19.06■□□□□ 0.64
VPS28-209ENST00000528142 PSMB9P28065 219 aa19.06■□□□□ 0.64
VPS28-209ENST00000528142 DUSP3P51452 185 aaPredicted RBP19.06■□□□□ 0.64
VPS28-209ENST00000528142 EBPQ15125 230 aaKnown RBP19.06■□□□□ 0.64
VPS28-209ENST00000528142 NKAIN1Q4KMZ8 207 aa19.06■□□□□ 0.64
VPS28-209ENST00000528142 FNDC7Q5VTL7 733 aa19.06■□□□□ 0.64
VPS28-209ENST00000528142 ZNF385CQ66K41 422 aaPredicted RBP19.06■□□□□ 0.64
VPS28-209ENST00000528142 C9orf40Q8IXQ3 194 aa19.06■□□□□ 0.64
VPS28-209ENST00000528142 ZNF426Q9BUY5 554 aa19.06■□□□□ 0.64
VPS28-209ENST00000528142 TSSK6Q9BXA6 273 aa19.06■□□□□ 0.64
VPS28-209ENST00000528142 CDH10Q9Y6N8 788 aa19.06■□□□□ 0.64
VPS28-209ENST00000528142 A0A1W2PPW3 197 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 SYNDIG1LA6NDD5 238 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 GALR2O43603 387 aaPredicted RBP19.05■□□□□ 0.64
VPS28-209ENST00000528142 CSTAP01040 98 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms