RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 OR56B1Q8NGI3 324 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 ABHD5Q8WTS1 349 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 DAZLQ92904 295 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 PKMYT1Q99640 499 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 PAPOLGQ9BWT3 736 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 ZDHHC5Q9C0B5 715 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 SEMA4CQ9C0C4 833 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 POLLQ9UGP5 575 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 AK6Q9Y3D8 172 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 GLI2P10070 1586 aa10.61□□□□□ -0.71
LIMCH1-217ENST00000512946 UPK3BL1B0FP48 263 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 UPK3BL2E5RIL1 263 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 FZD7O75084 574 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 CDC123O75794 336 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 ALDOAP04075 364 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 SULT1A2P50226 295 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 MRPS34P82930 218 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 TNFRSF17Q02223 184 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 PLGLB1Q02325 96 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 GRB7Q14451 532 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 ADIRFQ15847 76 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 MANEALQ5VSG8 457 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 ENPP6Q6UWR7 440 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 VITQ6UXI7 678 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 FAM185AQ8N0U4 392 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 UBL7Q96S82 380 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 HSD3B7Q9H2F3 369 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 LIN7BQ9HAP6 207 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 POLMQ9NP87 494 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 ATP13A2Q9NQ11 1180 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 HAO2Q9NYQ3 351 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 IL20Q9NYY1 176 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 RIMS3Q9UJD0 308 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 POU2F3Q9UKI9 436 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 GAB2Q9UQC2 676 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 NPFFR2Q9Y5X5 522 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 VSTM2BA6NLU5 285 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 MT-ND4P03905 459 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 DHRS4L1P0CG22 281 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 STK19P49842 368 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 HSD17B7P56937 341 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 UBE2G2P60604 165 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 GPLD1P80108 840 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 OC90Q02509 493 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 OXA1LQ15070 435 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 SDHAF4Q5VUM1 108 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 OR4D6Q8NGJ1 314 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 STT3BQ8TCJ2 826 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 TMEM125Q96AQ2 219 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 ANKRD9Q96BM1 317 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 ARSGQ96EG1 525 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 SMOC2Q9H3U7 446 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 UNC13BO14795 1591 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 METTL15A6NJ78 407 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 GJE1A6NN92 205 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 HIDE1A8MVS5 230 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 RFC3P40938 356 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 BDH1Q02338 343 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 ZNF92Q03936 586 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 GBX1Q14549 363 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 ECM1Q16610 540 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 MEP1BQ16820 701 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 LEG1Q6P5S2 330 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 NXPE4Q6UWF7 544 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 GPR26Q8NDV2 337 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 OR9A2Q8NGT5 310 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 TMEM163Q8TC26 289 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 DUSP19Q8WTR2 217 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 PRRC1Q96M27 445 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 CASD1Q96PB1 797 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 KCNA7Q96RP8 456 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 C1QTNF2Q9BXJ5 285 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 ARV1Q9H2C2 271 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 SEMA6CQ9H3T2 930 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 DPEP3Q9H4B8 488 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 EGLN3Q9H6Z9 239 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 APOBEC3GQ9HC16 384 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 DUSP22Q9NRW4 184 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 ZCCHC11Q5TAX3 1644 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 YJEFN3A6XGL0 299 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 PDGFBP01127 241 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 RAF1P04049 648 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 IL1R2P27930 398 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 DAP3P51398 398 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 ADARB1P78563 741 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 LTBQ06643 244 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 ASAH1Q13510 395 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 TMEM164Q5U3C3 297 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 TMUB2Q71RG4 321 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 GPR155Q7Z3F1 870 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 CPOQ8IVL8 374 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 DCAF4L2Q8NA75 395 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 KDF1Q8NAX2 398 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 LRIG1Q96JA1 1093 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 ELF4Q99607 663 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 C1orf198Q9H425 327 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 C1GALT1Q9NS00 363 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 B4GALT7Q9UBV7 327 aa10.6□□□□□ -0.71
LIMCH1-217ENST00000512946 PEX12O00623 359 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 KLK3P07288 261 aaPredicted RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms