RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 STOX1Q6ZVD7 989 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ADCK2Q7Z695 626 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ASPGQ86U10 573 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ITIH5Q86UX2 942 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PLA2G4DQ86XP0 818 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SLC22A9Q8IVM8 553 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 LRRC34Q8IZ02 419 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 NUP93Q8N1F7 819 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ZNF786Q8N393 782 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ZNF433Q8N7K0 673 aaPredicted RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 TPRX1Q8N7U7 411 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 MLKLQ8NB16 471 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 UXS1Q8NBZ7 420 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ZBTB44Q8NCP5 570 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ICA1LQ8NDH6 482 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CNNM3Q8NE01 707 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CLHC1Q8NHS4 586 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 FANK1Q8TC84 345 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PHOSPHO2Q8TCD6 241 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SLC2A14Q8TDB8 520 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 TFB1MQ8WVM0 346 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 IL22RA2Q969J5 263 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 RAD51AP1Q96B01 352 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 RMND5BQ96G75 393 aaPredicted RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 OLFM3Q96PB7 478 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 RAB3IPQ96QF0 476 aaPredicted RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 TXN2Q99757 166 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 LLPHQ9BRT6 129 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 CHRDL1Q9BU40 450 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 TRIM62Q9BVG3 475 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CALN1Q9BXU9 219 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ACPTQ9BZG2 426 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CRNKL1Q9BZJ0 848 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 CCSER1Q9C0I3 900 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 NAT10Q9H0A0 1025 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 ABCG8Q9H221 673 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 OR51B5Q9H339 312 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 THAP9Q9H5L6 903 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 IL1RAPL2Q9NP60 686 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 LZTFL1Q9NQ48 299 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SAMSN1Q9NSI8 373 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 NUDT15Q9NV35 164 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 RHBDL2Q9NX52 303 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 HMG20BQ9P0W2 317 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 EIF3KQ9UBQ5 218 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 ZNF282Q9UDV7 671 aaPredicted RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 MLXQ9UH92 298 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 IL19Q9UHD0 177 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SNX7Q9UNH6 387 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 STK38LQ9Y2H1 464 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 KLK4Q9Y5K2 254 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 POMT1Q9Y6A1 747 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PRDM15P57071 1507 aaPredicted RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 ZMYM4Q5VZL5 1548 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 IFT140Q96RY7 1462 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 CEP164Q9UPV0 1460 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 CLIP1P30622 1438 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 CPSF1Q10570 1443 aaKnown RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 SETD5Q9C0A6 1442 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 INSRP06213 1382 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 ANKRD30BQ9BXX2 1392 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 CFAP73A6NFT4 308 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 ARGFXA6NJG6 315 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 B4DXG7 233 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 GPR89AB7ZAQ6 455 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 H0YCG3 227 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SLC9A3R1O14745 358 aaPredicted RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 CASC3O15234 703 aaKnown RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 ALOX15BO15296 676 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SSX5O60225 188 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 PRPSAP2O60256 369 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SEC22BO75396 215 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 GMNNO75496 209 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 GRAP2O75791 330 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 RBBP9O75884 186 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 UFL1O94874 794 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 ANP32DO95626 131 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 KRT75O95678 551 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 MMP10P09238 476 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 HMOX1P09601 288 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 GPR89BP0CG08 455 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SPP1P10451 314 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 CLUP10909 449 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 GHRP10912 638 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 PDHBP11177 359 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 PRPS2P11908 318 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 HOXB8P17481 243 aaPredicted RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 HLA-DPA1P20036 260 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 ACKR3P25106 362 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 NMT1P30419 496 aaKnown RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 ADSSP30520 456 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 HSPA9P38646 679 aaKnown RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 PPP1R2P41236 205 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 XCR1P46094 333 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 OR3A1P47881 315 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 CCT3P49368 545 aaKnown RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 STARP49675 285 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SLC26A2P50443 739 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 EFNA3P52797 238 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 CAPZA1P52907 286 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms