RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 ELAVL4P26378 380 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 EPHA4P54764 986 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 HSPB3Q12988 150 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 TUSC3Q13454 348 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 C4orf46Q504U0 113 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 FNDC3BQ53EP0 1204 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 MS4A13Q5J8X5 152 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 EOGTQ5NDL2 527 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 B3GNTL1Q67FW5 361 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 BTN2A1Q7KYR7 527 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 ABHD13Q7L211 337 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 DPPA2Q7Z7J5 298 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 SIRT6Q8N6T7 355 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 TMEM99Q8N816 258 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 TEX19Q8NA77 164 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 CYB561A3Q8NBI2 242 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 GPR32P1Q8NGA4 272 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 OR4K5Q8NGD3 323 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 OR56B4Q8NH76 319 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 GNPDA2Q8TDQ7 276 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 ACOT11Q8WXI4 607 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 PMM1Q92871 262 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 KIAA1143Q96AT1 154 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 MRPL38Q96DV4 380 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 SMARCD1Q96GM5 515 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 FAM46AQ96IP4 442 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 INSM2Q96T92 566 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 WRAP53Q9BUR4 548 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 SMG9Q9H0W8 520 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 NLE1Q9NVX2 485 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 MED11Q9P086 117 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 MARK1Q9P0L2 795 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 DTX4Q9Y2E6 619 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 UBR3Q6ZT12 1888 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 TRBV23OR9-2A0A075B6M9 112 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 TMEM218A2RU14 115 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 CPED1A4D0V7 1026 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 C5orf58C9J3I9 102 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 SNRPCP09234 159 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 C6P13671 934 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 GNSP15586 552 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 AQP2P41181 271 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 BUD31P41223 144 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 CCR9P51686 369 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 TPBGQ13641 420 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 ELAVL1Q15717 326 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 FRG2Q64ET8 278 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 ZNF770Q6IQ21 691 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 UBE2R2Q712K3 238 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 OR2W3Q7Z3T1 314 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 HSD17B13Q7Z5P4 300 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 ZNF546Q86UE3 836 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 TGIF2LXQ8IUE1 241 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 CPOQ8IVL8 374 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 NPAS3Q8IXF0 933 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 RFLNBQ8N5W9 214 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 LILRA3Q8N6C8 439 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 HORMAD2Q8N7B1 307 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 ARIH2OSQ8N7S6 290 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 KCT2Q8NC54 265 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 DNAAF1Q8NEP3 725 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 OR4Q3Q8NH05 313 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 PHOSPHO2Q8TCD6 241 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 FAM167AQ96KS9 214 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 FRG2BQ96QU4 278 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 ZNF559Q9BR84 538 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 HCAR1Q9BXC0 346 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 LAT2Q9GZY6 243 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 OR51M1Q9H341 326 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 OR51I1Q9H343 314 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 KCNK15Q9H427 330 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 OR2S2Q9NQN1 319 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 ZFP57Q9NU63 452 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 ZSCAN32Q9NX65 697 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 PISDQ9UG56 409 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 TESQ9UGI8 421 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 WASF3Q9UPY6 502 aa6.78□□□□□ -1.32
LIMCH1-207ENST00000508466 MCM3APO60318 1980 aa6.77□□□□□ -1.32
LIMCH1-207ENST00000508466 GRXCR2A6NFK2 248 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 C2orf74A8MZ97 194 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 PRAMEF2O60811 474 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 CLDN7O95471 211 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 TGM6O95932 706 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 LGALS2P05162 132 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 MUC1P15941 1255 aaPredicted RBP6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 PPP3CBP16298 524 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 PRPS1L1P21108 318 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 PYCR1P32322 319 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 THBS2P35442 1172 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 PTH2RP49190 550 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 RPL34P49207 117 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 POU3F4P49335 361 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 RIDAP52758 137 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 TAP2Q03519 686 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 ILF3Q12906 894 aaKnown RBP eCLIP6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 SSX2Q16385 188 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 SYPL1Q16563 259 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 SYTL3Q4VX76 610 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 TIGD5Q53EQ6 642 aa6.77□□□□□ -1.33
LIMCH1-207ENST00000508466 CST9Q5W186 159 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms