RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CELA2BP08218 269 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 SLC35G6P0C7Q6 338 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 UGT2B7P16662 529 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 ELK1P19419 428 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 ALAS2P22557 587 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 TEAD1P28347 426 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 COX10Q12887 443 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 MAPK14Q16539 360 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 MFSD12Q6NUT3 480 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 PLBD1Q6P4A8 553 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 CPOQ8IVL8 374 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 RDH10Q8IZV5 341 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 LRRC25Q8N386 305 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 OR4M1Q8NGD0 313 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 SETD6Q8TBK2 473 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 GCDHQ92947 438 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 OR51V1Q9H2C8 321 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 DZANK1Q9NVP4 752 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 NKIRAS2Q9NYR9 191 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 KLF15Q9UIH9 416 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 SLC7A7Q9UM01 511 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 CDC42EP2O14613 210 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 CASC3O15234 703 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 EEF1E1O43324 174 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 AKAP8O43823 692 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 OR2B3O76000 313 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 IL1AP01583 271 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 POU3F3P20264 500 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 SHC1P29353 583 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 ACVR1BP36896 505 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 SLC1A3P43003 542 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 LSSP48449 732 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 ANXA11P50995 505 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 HCCSP53701 268 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 GAS1P54826 345 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 RGS1Q08116 209 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 SMUG1Q53HV7 270 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 YIF1BQ5BJH7 314 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 CYB561A3Q8NBI2 242 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 SRFBP1Q8NEF9 429 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 OR8H1Q8NGG4 311 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 PIGKQ92643 395 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 FGF11Q92914 225 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 RELTQ969Z4 430 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 GAL3ST3Q96A11 431 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 ARHGDIGQ99819 225 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 RBCK1Q9BYM8 510 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 SLC23A1Q9UHI7 598 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 WDR45Q9Y484 360 aa15.37■□□□□ 0.05
CCDC88B-210ENST00000494566 GNB5O14775 395 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 HCRTR1O43613 425 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 CLUP10909 449 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 ACADMP11310 421 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 SSTR2P30874 369 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 CTHP32929 405 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 OMPP47874 163 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 TNFRSF17Q02223 184 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 EXOSC7Q15024 291 aaKnown RBP15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 TRAM2Q15035 370 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 PUS10Q3MIT2 529 aaKnown RBP15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 FCRL6Q6DN72 434 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 TMEM92Q6UXU6 159 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 GDF7Q7Z4P5 450 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 SIRT6Q8N6T7 355 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 OR51L1Q8NGJ5 315 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 FLVCR1-AS1Q8TAF5 88 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 TMEM163Q8TC26 289 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 MRGPRX1Q96LB2 322 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 SAMD8Q96LT4 415 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 ZFP3Q96NJ6 502 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 OR2A5Q96R48 311 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 ATF6BQ99941 703 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 EVA1BQ9NVM1 165 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 KCMF1Q9P0J7 381 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 SF3B6Q9Y3B4 125 aaKnown RBP15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 A0A1W2PQ72 361 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 PEX12O00623 359 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 FCER2P06734 321 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 GNA13Q14344 377 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 NFATC4Q14934 902 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 FIGNL1Q6PIW4 674 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 ZNF836Q6ZNA1 936 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 SAMD12Q8N8I0 201 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 SLC41A3Q96GZ6 507 aa15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 ZNF443Q9Y2A4 671 aaPredicted RBP15.36■□□□□ 0.05
CCDC88B-210ENST00000494566 ZNF780AO75290 641 aaPredicted RBP15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 ALX3O95076 343 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 ACP2P11117 423 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 TNFRSF4P43489 277 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 GNG2P59768 71 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 RPS15AP62244 130 aaKnown RBP15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 EFNB1P98172 346 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 DEFB110Q30KQ9 67 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 ZNF628Q5EBL2 1059 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 CD300LDQ6UXZ3 194 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 SLC36A4Q6YBV0 504 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 ELMOD2Q8IZ81 293 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 OR10H4Q8NGA5 316 aa15.35■□□□□ 0.05
CCDC88B-210ENST00000494566 OR4K14Q8NGD5 310 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms