RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 FIS1Q9Y3D6 152 aa11.05□□□□□ -0.64
CPSF3-204ENST00000489403 ZANQ9Y493 2812 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 USF3Q68DE3 2245 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 AZIN1O14977 448 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 EFNA2O43921 213 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 NTN1O95631 604 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 SHBGP04278 402 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 LINC00032P0C843 101 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 CPA3P15088 417 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 ELK4P28324 431 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 SERPINB4P48594 390 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 CARD18P57730 90 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 POU6F2P78424 691 aaPredicted RBP11.04□□□□□ -0.64
CPSF3-204ENST00000489403 ZNF117Q03924 483 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 KRTAP1-1Q07627 177 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 TNK1Q13470 666 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 LASP1Q14847 261 aaKnown RBP11.04□□□□□ -0.64
CPSF3-204ENST00000489403 GTF2IRD2BQ6EKJ0 949 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 ALKBH2Q6NS38 261 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 ADAM5Q6NVV9 412 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 NUFIP2Q7Z417 695 aaKnown RBP11.04□□□□□ -0.64
CPSF3-204ENST00000489403 GTF2IRD2Q86UP8 949 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 TUSC5Q8IXB3 177 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 GSPT2Q8IYD1 628 aaKnown RBP11.04□□□□□ -0.64
CPSF3-204ENST00000489403 GABRG1Q8N1C3 465 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 LRRN4CLQ8ND94 238 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 STEAP2Q8NFT2 490 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 LILRB1Q8NHL6 650 aaPredicted RBP11.04□□□□□ -0.64
CPSF3-204ENST00000489403 CDS1Q92903 461 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 CPNE4Q96A23 557 aaPredicted RBP11.04□□□□□ -0.64
CPSF3-204ENST00000489403 FAM120BQ96EK7 910 aaKnown RBP11.04□□□□□ -0.64
CPSF3-204ENST00000489403 TACO1Q9BSH4 297 aaKnown RBP11.04□□□□□ -0.64
CPSF3-204ENST00000489403 ZCCHC3Q9NUD5 404 aaKnown RBP11.04□□□□□ -0.64
CPSF3-204ENST00000489403 GIN1Q9NXP7 522 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 KLHL13Q9P2N7 655 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 LAMP3Q9UQV4 416 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 TMED5Q9Y3A6 229 aa11.04□□□□□ -0.64
CPSF3-204ENST00000489403 CUBNO60494 3623 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 ROS1P08922 2347 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 HIVEP2P31629 2446 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 NPIPA5A0A0B4J1W7 369 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 NPIPA7E9PJI5 369 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 OVOL3O00110 214 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 OIP5O43482 229 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 HSPA4LO95757 839 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 HMGN2P05204 90 aaKnown RBP11.03□□□□□ -0.64
CPSF3-204ENST00000489403 NPIPA8P0DM63 369 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 CRHR1P34998 444 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 EIF1P41567 113 aaKnown RBP11.03□□□□□ -0.64
CPSF3-204ENST00000489403 CCT5P48643 541 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 RNF144AP50876 292 aaPredicted RBP11.03□□□□□ -0.64
CPSF3-204ENST00000489403 P2RX1P51575 399 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 PCLAFQ15004 111 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 MLC1Q15049 377 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 RNPS1Q15287 305 aaKnown RBP11.03□□□□□ -0.64
CPSF3-204ENST00000489403 GALNTL6Q49A17 601 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 TMEM201Q5SNT2 666 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 NCMAPQ5T1S8 102 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.03□□□□□ -0.64
CPSF3-204ENST00000489403 SFRP5Q5T4F7 317 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 KANK2Q63ZY3 851 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 CBLN3Q6UW01 205 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 MTERF4Q7Z6M4 381 aaKnown RBP11.03□□□□□ -0.64
CPSF3-204ENST00000489403 ATG4DQ86TL0 474 aaPredicted RBP11.03□□□□□ -0.64
CPSF3-204ENST00000489403 C10orf107Q8IVU9 208 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 MAPK1IP1LQ8NDC0 245 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 FBXO27Q8NI29 283 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 PHOSPHO1Q8TCT1 267 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 MTERF3Q96E29 417 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 STACQ99469 402 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 GATA5Q9BWX5 397 aaPredicted RBP11.03□□□□□ -0.64
CPSF3-204ENST00000489403 BTBD2Q9BX70 525 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 PIGUQ9H490 435 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 COQ10BQ9H8M1 238 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 DUSP22Q9NRW4 184 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 RNF115Q9Y4L5 304 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 DNAJC15Q9Y5T4 150 aa11.03□□□□□ -0.64
CPSF3-204ENST00000489403 CHD3Q12873 2000 aaKnown RBP11.02□□□□□ -0.64
CPSF3-204ENST00000489403 FREM1Q5H8C1 2179 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 COPEO14579 308 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 ZNF195O14628 629 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 CLOCKO15516 846 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 SOD3P08294 240 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 DANCRP0C864 163 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 PABPC4LP0CB38 370 aaKnown RBP11.02□□□□□ -0.65
CPSF3-204ENST00000489403 BCKDHAP12694 445 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 IL32P24001 234 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 ADH6P28332 368 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 ASMTP46597 345 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 VEZF1Q14119 521 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 TAB1Q15750 504 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 TOMM34Q15785 309 aaPredicted RBP11.02□□□□□ -0.65
CPSF3-204ENST00000489403 CLEC12BQ2HXU8 276 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 KLHL26Q53HC5 615 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 CDC73Q6P1J9 531 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 SEZ6L2Q6UXD5 910 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 LRIG3Q6UXM1 1119 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 FCRLAQ7L513 359 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 CXXC5Q7LFL8 322 aaKnown RBP11.02□□□□□ -0.65
CPSF3-204ENST00000489403 R3HCC1LQ7Z5L2 792 aaKnown RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms