RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 RFX2P48378 723 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 MCCD1P59942 119 aaPredicted RBP12.67□□□□□ -0.38
USP42-206ENST00000479544 MS4A15Q8N5U1 240 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 BBS1Q8NFJ9 593 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 ZNF559Q9BR84 538 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 AIFM2Q9BRQ8 373 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 MCM3APO60318 1980 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 C11orf98E9PRG8 122 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 INHAP05111 366 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 MORN1Q5T089 497 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 KLHDC8AQ8IYD2 350 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 NAXEQ8NCW5 288 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 ZNF514Q96K75 400 aaPredicted RBP12.67□□□□□ -0.38
USP42-206ENST00000479544 POLDIP3Q9BY77 421 aaKnown RBP12.67□□□□□ -0.38
USP42-206ENST00000479544 BARHL1Q9BZE3 327 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 GABARAPL1Q9H0R8 117 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 BRF2Q9HAW0 419 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 TDP1Q9NUW8 608 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 SCGB1D2O95969 90 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 ANXA7P20073 488 aaKnown RBP12.67□□□□□ -0.38
USP42-206ENST00000479544 HLA-DMAP28067 261 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 EVX1P49640 407 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 HCCSP53701 268 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 TDGQ13569 410 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 ARFRP1Q13795 201 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 ZNF169Q14929 603 aaPredicted RBP12.67□□□□□ -0.38
USP42-206ENST00000479544 NDUFAF7Q7L592 441 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 STX12Q86Y82 276 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 LGALS14Q8TCE9 139 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 ZFPM2Q8WW38 1151 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 UPRTQ96BW1 309 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 SRMSQ9H3Y6 488 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 IGFLR1Q9H665 355 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 NDUFB11Q9NX14 153 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 SDHAF2Q9NX18 166 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 SOHLH2Q9NX45 425 aa12.67□□□□□ -0.38
USP42-206ENST00000479544 TRABD2BA6NFA1 517 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 KHNYNO15037 678 aaKnown RBP12.66□□□□□ -0.38
USP42-206ENST00000479544 PEX14O75381 377 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 AMY2AP04746 511 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 POLR2CP19387 275 aaPredicted RBP12.66□□□□□ -0.38
USP42-206ENST00000479544 PSMB1P20618 241 aaKnown RBP12.66□□□□□ -0.38
USP42-206ENST00000479544 ETV6P41212 452 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 ACTR1BP42025 376 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 EPHA5P54756 1037 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 ACTR1AP61163 376 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 KIAA0040Q15053 153 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 ZNF783Q6ZMS7 281 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 PRICKLE2Q7Z3G6 844 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 OR56B4Q8NH76 319 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 SMPDL3BQ92485 455 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.66□□□□□ -0.38
USP42-206ENST00000479544 OR52A4PA6NMU1 304 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 B4GALT2O60909 372 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 TRAPPC2P0DI81 140 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 TRAPPC2BP0DI82 140 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 PTHLHP12272 177 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 AKR1C4P17516 323 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 GABRB1P18505 474 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 POU3F3P20264 500 aaPredicted RBP12.66□□□□□ -0.38
USP42-206ENST00000479544 NFYAP23511 347 aaPredicted RBP12.66□□□□□ -0.38
USP42-206ENST00000479544 SLC6A6P31641 620 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 ART1P52961 327 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 PGGHGQ32M88 737 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 C3orf38Q5JPI3 329 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 ZBTB37Q5TC79 503 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 TPGS2Q68CL5 300 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 KIAA1324Q6UXG2 1013 aaKnown RBP12.66□□□□□ -0.38
USP42-206ENST00000479544 RSPO2Q6UXX9 243 aaPredicted RBP12.66□□□□□ -0.38
USP42-206ENST00000479544 SLCO4C1Q6ZQN7 724 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 ZNF101Q8IZC7 436 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 CHAC2Q8WUX2 184 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 PPP1R14AQ96A00 147 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 PRRC1Q96M27 445 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 CMKLR1Q99788 373 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 PDCD1LG2Q9BQ51 273 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 ZMAT3Q9HA38 289 aaKnown RBP12.66□□□□□ -0.38
USP42-206ENST00000479544 STK25O00506 426 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 RNF13O43567 381 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 TACSTD2P09758 323 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 TFPIP10646 304 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 C6P13671 934 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 EPCAMP16422 314 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 CERS1P27544 350 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 PRKXP51817 358 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 LIM2P55344 173 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 KRBOX4Q5JUW0 171 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 ENTPD8Q5MY95 495 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 TMEM88Q6PEY1 159 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 STOML3Q8TAV4 291 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 TCEAL4Q96EI5 215 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 ATXN7L1Q9ULK2 861 aaPredicted RBP12.66□□□□□ -0.38
USP42-206ENST00000479544 OR1A2Q9Y585 309 aa12.66□□□□□ -0.38
USP42-206ENST00000479544 TEX51A0A1B0GUA7 166 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 METTL21EPA6NDL7 271 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 H7C0S8 307 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 B3GALT2O43825 422 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 CYB5AP00167 134 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 SLC6A11P48066 632 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 TPMTP51580 245 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms