RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 UBQLNLQ8IYU4 475 aa17.1■□□□□ 0.33
PTCD3-210ENST00000473829 ANKFN1Q8N957 763 aa17.1■□□□□ 0.33
PTCD3-210ENST00000473829 C9orf106Q8NAJ2 232 aa17.1■□□□□ 0.33
PTCD3-210ENST00000473829 ZNF524Q96C55 264 aa17.1■□□□□ 0.33
PTCD3-210ENST00000473829 PIGQQ9BRB3 760 aa17.1■□□□□ 0.33
PTCD3-210ENST00000473829 PAIP1Q9H074 479 aaKnown RBP17.1■□□□□ 0.33
PTCD3-210ENST00000473829 ZNF385DQ9H6B1 395 aa17.1■□□□□ 0.33
PTCD3-210ENST00000473829 ICAM5Q9UMF0 924 aa17.1■□□□□ 0.33
PTCD3-210ENST00000473829 WDR45Q9Y484 360 aa17.1■□□□□ 0.33
PTCD3-210ENST00000473829 HEATR5AQ86XA9 2040 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 MBD3L4A6NDZ8 208 aaPredicted RBP17.09■□□□□ 0.33
PTCD3-210ENST00000473829 MBD3L3A6NE82 208 aaPredicted RBP17.09■□□□□ 0.33
PTCD3-210ENST00000473829 MBD3L5A6NJ08 208 aaPredicted RBP17.09■□□□□ 0.33
PTCD3-210ENST00000473829 CLCA1A8K7I4 914 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 CHRM4P08173 479 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 PSMA4P25789 261 aaKnown RBP17.09■□□□□ 0.33
PTCD3-210ENST00000473829 TIMP3P35625 211 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 CLDN20P56880 219 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 GUCY1A3Q02108 690 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 SQLEQ14534 574 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 MAPK11Q15759 364 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 BCL2A1Q16548 175 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 SYPL1Q16563 259 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 C6orf10Q5SRN2 563 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 POMZP3Q6PJE2 187 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 MBD3L2Q8NHZ7 208 aaPredicted RBP17.09■□□□□ 0.33
PTCD3-210ENST00000473829 POC1BQ8TC44 478 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 ZG16BQ96DA0 208 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 ARSGQ96EG1 525 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 SAP130Q9H0E3 1048 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 QRSL1Q9H0R6 528 aaKnown RBP17.09■□□□□ 0.33
PTCD3-210ENST00000473829 MED4Q9NPJ6 270 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 CLCF1Q9UBD9 225 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 L3MBTL1Q9Y468 752 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 CENPEQ02224 2701 aa17.09■□□□□ 0.33
PTCD3-210ENST00000473829 A0A087WZY1 265 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 A0A0G2JND7 137 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 SERINC4A6NH21 518 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 SEC14L5O43304 696 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 BCAS1O75363 584 aaPredicted RBP17.08■□□□□ 0.32
PTCD3-210ENST00000473829 H6PDO95479 791 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 ANP32DO95626 131 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 GUSBP08236 651 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 LINGO3P0C6S8 592 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 UBL4AP11441 157 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 PEPDP12955 493 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 ETFAP13804 333 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 ZNF17P17021 662 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 P2RX1P51575 399 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 ZNF41P51814 821 aaPredicted RBP17.08■□□□□ 0.32
PTCD3-210ENST00000473829 ZNF136P52737 540 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 PLAURQ03405 335 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 CHRNEQ04844 493 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 TOMM34Q15785 309 aaPredicted RBP17.08■□□□□ 0.32
PTCD3-210ENST00000473829 GPAT3Q53EU6 434 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 AGKQ53H12 422 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 HSP90B2PQ58FF3 399 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 AP1ARQ63HQ0 302 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 ZNF619Q8N2I2 560 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 GTPBP8Q8N3Z3 284 aaPredicted RBP17.08■□□□□ 0.32
PTCD3-210ENST00000473829 ARFGAP2Q8N6H7 521 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 RELL2Q8NC24 303 aaPredicted RBP17.08■□□□□ 0.32
PTCD3-210ENST00000473829 SMPDL3BQ92485 455 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 SPDL1Q96EA4 605 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 RNF145Q96MT1 663 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 SLC38A1Q9H2H9 487 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 RUBCNLQ9H714 662 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 CALHM2Q9HA72 323 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 TPT1P8Q9HAU6 139 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 HHATLQ9HCP6 504 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 NPDC1Q9NQX5 325 aaPredicted RBP17.08■□□□□ 0.32
PTCD3-210ENST00000473829 POLE3Q9NRF9 147 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 FGFR1OP2Q9NVK5 253 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 SLC25A37Q9NYZ2 338 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 SLAMF8Q9P0V8 285 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 PCDHB14Q9Y5E9 798 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 MED12LQ86YW9 2145 aa17.08■□□□□ 0.32
PTCD3-210ENST00000473829 C7orf72A4D263 438 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 FAM47E-STBD1D6RA91 191 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 H3BNH8 94 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 KRT75O95678 551 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 SNRPB2P08579 225 aaKnown RBP17.07■□□□□ 0.32
PTCD3-210ENST00000473829 NCF2P19878 526 aaPredicted RBP17.07■□□□□ 0.32
PTCD3-210ENST00000473829 IL11P20809 199 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 SUMO3P55854 103 aaPredicted RBP17.07■□□□□ 0.32
PTCD3-210ENST00000473829 FOXF1Q12946 379 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 SKP2Q13309 424 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 SF3B4Q15427 424 aaKnown RBP eCLIP17.07■□□□□ 0.322e-6■■■□□ 18.7
PTCD3-210ENST00000473829 PAGE3Q5JUK9 113 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 GGNQ86UU5 652 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 MSRB3Q8IXL7 192 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 ZBTB8AQ96BR9 441 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 UCN2Q96RP3 112 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 SIKE1Q9BRV8 207 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 TMEM120AQ9BXJ8 343 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 CHST11Q9NPF2 352 aa17.07■□□□□ 0.32
PTCD3-210ENST00000473829 INTS1Q8N201 2190 aaKnown RBP17.06■□□□□ 0.32
PTCD3-210ENST00000473829 A0A096LPI6 279 aa17.06■□□□□ 0.32
PTCD3-210ENST00000473829 HSPB2A8KAH6 182 aa17.06■□□□□ 0.32
PTCD3-210ENST00000473829 LINC01387J3KSC0 135 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms