RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 STK32CQ86UX6 486 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 LILRA2Q8N149 483 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 PHOSPHO1Q8TCT1 267 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 NUDT8Q8WV74 236 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 ROBO4Q8WZ75 1007 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 OSTF1Q92882 214 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 MTERF3Q96E29 417 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 PLPPR2Q96GM1 343 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 KLHL15Q96M94 604 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 BTBD2Q9BX70 525 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 PPCSQ9HAB8 311 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 FANCFQ9NPI8 374 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 GLRX2Q9NS18 164 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 SNX8Q9Y5X2 465 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 HIVEP2P31629 2446 aa18.82■□□□□ 0.6
COL9A3-207ENST00000467819 NPIPA5A0A0B4J1W7 369 aa18.81■□□□□ 0.6
COL9A3-207ENST00000467819 A0A1W2PQD3 144 aa18.81■□□□□ 0.6
COL9A3-207ENST00000467819 NPIPA7E9PJI5 369 aa18.81■□□□□ 0.6
COL9A3-207ENST00000467819 PIP5K1BO14986 540 aa18.81■□□□□ 0.6
COL9A3-207ENST00000467819 TUBBP07437 444 aa18.81■□□□□ 0.6
COL9A3-207ENST00000467819 NPIPA8P0DM63 369 aa18.81■□□□□ 0.6
COL9A3-207ENST00000467819 SHC1P29353 583 aa18.81■□□□□ 0.6
COL9A3-207ENST00000467819 ZNF117Q03924 483 aa18.81■□□□□ 0.6
COL9A3-207ENST00000467819 EXOSC6Q5RKV6 272 aaKnown RBP18.81■□□□□ 0.6
COL9A3-207ENST00000467819 TRABD2AQ86V40 505 aa18.81■□□□□ 0.6
COL9A3-207ENST00000467819 OR7A2PQ8NGA2 310 aa18.81■□□□□ 0.6
COL9A3-207ENST00000467819 AGR3Q8TD06 166 aa18.81■□□□□ 0.6
COL9A3-207ENST00000467819 GSX2Q9BZM3 304 aa18.81■□□□□ 0.6
COL9A3-207ENST00000467819 SCAMP2O15127 329 aaKnown RBP18.8■□□□□ 0.6
COL9A3-207ENST00000467819 OIP5O43482 229 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 NUDT14O95848 222 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 LINGO3P0C6S8 592 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 DDX5P17844 614 aaKnown RBP18.8■□□□□ 0.6
COL9A3-207ENST00000467819 ATP6V1C1P21283 382 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 PCSK6P29122 969 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 ALDH3A1P30838 453 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 NR1H2P55055 460 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 CARD18P57730 90 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 ZNF239Q16600 458 aaKnown RBP18.8■□□□□ 0.6
COL9A3-207ENST00000467819 LRIG3Q6UXM1 1119 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 ABHD3Q8WU67 409 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 TMEM171Q8WVE6 324 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 STACQ99469 402 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 MECRQ9BV79 373 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 PIGUQ9H490 435 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 DUSP22Q9NRW4 184 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 ATP6V1HQ9UI12 483 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 TRAF6Q9Y4K3 522 aa18.8■□□□□ 0.6
COL9A3-207ENST00000467819 TLDC2A0PJX2 215 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 TMEM114B3SHH9 223 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 HSPA4LO95757 839 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 LAMP1P11279 417 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 TP53BP2Q13625 1128 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 MLC1Q15049 377 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 ARL13AQ5H913 290 aaPredicted RBP18.79■□□□□ 0.6
COL9A3-207ENST00000467819 GTF2IRD2BQ6EKJ0 949 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 CDC73Q6P1J9 531 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 CBLN3Q6UW01 205 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 GTF2IRD2Q86UP8 949 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 REXO5Q96IC2 774 aaKnown RBP18.79■□□□□ 0.6
COL9A3-207ENST00000467819 APOPT1Q96IL0 206 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 C1orf50Q9BV19 199 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 SRXN1Q9BYN0 137 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 GPR52Q9Y2T5 361 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 DNHD1Q96M86 4753 aa18.79■□□□□ 0.6
COL9A3-207ENST00000467819 HS3ST1O14792 307 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 NPHS1O60500 1241 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 PEX11AO75192 247 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 CNOT4O95628 575 aaKnown RBP18.78■□□□□ 0.6
COL9A3-207ENST00000467819 NTN1O95631 604 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 FGF4P08620 206 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 PSMB1P20618 241 aaKnown RBP18.78■□□□□ 0.6
COL9A3-207ENST00000467819 ELK4P28324 431 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 MAPK1P28482 360 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 EIF1P41567 113 aaKnown RBP18.78■□□□□ 0.6
COL9A3-207ENST00000467819 ZNF844Q08AG5 666 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 PTGR1Q14914 329 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 UGT3A2Q3SY77 523 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 SPDYE7PQ495Y7 208 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 DCST2Q5T1A1 773 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 MTERF4Q7Z6M4 381 aaKnown RBP18.78■□□□□ 0.6
COL9A3-207ENST00000467819 ZNF614Q8N883 585 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 EIF1ADQ8N9N8 165 aaKnown RBP18.78■□□□□ 0.6
COL9A3-207ENST00000467819 ZNF527Q8NB42 609 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 ATP6V1C2Q8NEY4 427 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 FBXO27Q8NI29 283 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 ADAMTS15Q8TE58 950 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 RNF128Q8TEB7 428 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 IGFBPL1Q8WX77 278 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 PPP3R2Q96LZ3 170 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 CXorf36Q9H7Y0 433 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 CARD8Q9Y2G2 431 aa18.78■□□□□ 0.6
COL9A3-207ENST00000467819 EFNA2O43921 213 aa18.77■□□□□ 0.6
COL9A3-207ENST00000467819 PABPC4LP0CB38 370 aaKnown RBP18.77■□□□□ 0.6
COL9A3-207ENST00000467819 RPL3P39023 403 aaKnown RBP18.77■□□□□ 0.6
COL9A3-207ENST00000467819 CCT3P49368 545 aaKnown RBP18.77■□□□□ 0.6
COL9A3-207ENST00000467819 P2RX1P51575 399 aa18.77■□□□□ 0.6
COL9A3-207ENST00000467819 TSC22D1Q15714 1073 aa18.77■□□□□ 0.6
COL9A3-207ENST00000467819 NDUFAF6Q330K2 333 aa18.77■□□□□ 0.6
COL9A3-207ENST00000467819 TMEM201Q5SNT2 666 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms