RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 HPCAP84074 193 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 C17orf67Q0P5P2 114 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 STX5Q13190 355 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 NFYCQ13952 458 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 CYLC2Q14093 348 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-205ENST00000465238 GPR68Q15743 365 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 OR5M10Q6IEU7 315 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 PIGWQ7Z7B1 504 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 RETREG3Q86VR2 466 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 SNX32Q86XE0 403 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 MSRB3Q8IXL7 192 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 WDSUB1Q8N9V3 476 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 DUSP19Q8WTR2 217 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 POLE3Q9NRF9 147 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 THUMPD1Q9NXG2 353 aaKnown RBP16.09■□□□□ 0.17
COL7A1-205ENST00000465238 VAPAQ9P0L0 249 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 SPRR3Q9UBC9 169 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 Q9UFV3 132 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 ADAM21Q9UKJ8 722 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 ARL2BPQ9Y2Y0 163 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 TMEM247A6NEH6 219 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 BBIP1A8MTZ0 92 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 H3BNH8 94 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 FCMRO60667 390 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 GUSBP08236 651 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 NR2F1P10589 423 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 ENDOUP21128 410 aaKnown RBP16.08■□□□□ 0.16
COL7A1-205ENST00000465238 MVDP53602 400 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 DSTNP60981 165 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 FADDQ13158 208 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 RGNQ15493 299 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 SLC25A35Q3KQZ1 300 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 APOOLQ6UXV4 268 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 DLEU7Q6UYE1 221 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 OR4K17Q8NGC6 315 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 CCT8L2Q96SF2 557 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 ZNF350Q9GZX5 532 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 ALKBH4Q9NXW9 302 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 P2RX2Q9UBL9 471 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 MKLN1Q9UL63 735 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 CORO2BQ9UQ03 480 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 WDR45Q9Y484 360 aa16.08■□□□□ 0.16
COL7A1-205ENST00000465238 TRBV5-3A0A0A0MS03 114 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 NPIPA5A0A0B4J1W7 369 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 A0A1W2PQD3 144 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 NPIPA7E9PJI5 369 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 FBP2O00757 339 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 NPIPA8P0DM63 369 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 ADH7P40394 386 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 MYBPHQ13203 477 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 SYPL1Q16563 259 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 RUNDC3AQ59EK9 446 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 COQ5Q5HYK3 327 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 RIPPLY2Q5TAB7 128 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 OLIG3Q7RTU3 272 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 TMEM200AQ86VY9 491 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 MISPQ8IVT2 679 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 ZNF614Q8N883 585 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 ANKFN1Q8N957 763 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 GATSQ8NAP1 163 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 PCYOX1LQ8NBM8 494 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 RP9Q8TA86 221 aaKnown RBP16.07■□□□□ 0.16
COL7A1-205ENST00000465238 NEIL3Q8TAT5 605 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 TRNT1Q96Q11 434 aaKnown RBP16.07■□□□□ 0.16
COL7A1-205ENST00000465238 CGREF1Q99674 301 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 CCDC106Q9BWC9 280 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 RTN4RQ9BZR6 473 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 UBQLN3Q9H347 655 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 DSN1Q9H410 356 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 PTGES2Q9H7Z7 377 aa16.07■□□□□ 0.16
COL7A1-205ENST00000465238 PRAMEF27A3QJZ7 478 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 MRASO14807 208 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 H6PDO95479 791 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 FAM107AO95990 144 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 HPNP05981 417 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 FUT5Q11128 374 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 GNA13Q14344 377 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 KLHL26Q53HC5 615 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 GKAP1Q5VSY0 366 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-205ENST00000465238 REP15Q6BDI9 236 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 TYW3Q6IPR3 259 aaKnown RBP16.06■□□□□ 0.16
COL7A1-205ENST00000465238 LRRC74BQ6ZQY2 392 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 MTERF4Q7Z6M4 381 aaKnown RBP16.06■□□□□ 0.16
COL7A1-205ENST00000465238 LIX1LQ8IVB5 337 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 ULK2Q8IYT8 1036 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 ZNF619Q8N2I2 560 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 PHOSPHO1Q8TCT1 267 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 ANKRD27Q96NW4 1050 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 THUMPD3Q9BV44 507 aaKnown RBP16.06■□□□□ 0.16
COL7A1-205ENST00000465238 SLC6A15Q9H2J7 730 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 CALML5Q9NZT1 146 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 MED11Q9P086 117 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 FBXL2Q9UKC9 423 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 DTNAQ9Y4J8 743 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 GMEB1Q9Y692 573 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 MAP1AP78559 2803 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-205ENST00000465238 ITPR3Q14573 2671 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 PCNX3Q9H6A9 2034 aa16.06■□□□□ 0.16
COL7A1-205ENST00000465238 NPIPB9F8W1W9 429 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 GTPBP1O00178 669 aaKnown RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms