RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 OIP5O43482 229 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 EIF4E2O60573 245 aaKnown RBP13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 WDR1O75083 606 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 CSTAP01040 98 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 LDLRP01130 860 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 NPPAP01160 153 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 BCHEP06276 602 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 UBL4AP11441 157 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 P2RX1P51575 399 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 CRISP3P54108 245 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 B3GALT5-AS1P59052 145 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 KCNJ10P78508 379 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 FGFBP1Q14512 234 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 RAET1LQ5VY80 246 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 REP15Q6BDI9 236 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 MTFR2Q6P444 385 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 ENPP6Q6UWR7 440 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 PIGWQ7Z7B1 504 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 HMGN2P46Q86SG4 172 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 PM20D2Q8IYS1 436 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 SSC4DQ8WTU2 575 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 MAL2Q969L2 176 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 TMEM19Q96HH6 336 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 TREX2Q9BQ50 279 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 VKORC1Q9BQB6 163 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 PIGQQ9BRB3 760 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 CPPED1Q9BRF8 314 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 THUMPD3Q9BV44 507 aaKnown RBP13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 CCDC106Q9BWC9 280 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 LAT2Q9GZY6 243 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 ICAM5Q9UMF0 924 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 VDAC3Q9Y277 283 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 SLC35A3Q9Y2D2 325 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 L3MBTL1Q9Y468 752 aa13.15□□□□□ -0.3
SQSTM1-205ENST00000464493 A0A0G2JPF8 293 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 AHRRA9YTQ3 701 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 HNRNPCL2B2RXH8 293 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 HNRNPCL3B7ZW38 293 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 LINC01387J3KSC0 135 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 MRASO14807 208 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 HNRNPCL1O60812 293 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 NUDT14O95848 222 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 DBIP07108 87 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 HOXD4P09016 255 aaPredicted RBP13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 HNRNPCL4P0DMR1 293 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 GABRA1P14867 456 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 IL7RP16871 459 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 ACVR2AP27037 513 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 PGM1P36871 562 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 STARP49675 285 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 ZNF41P51814 821 aaPredicted RBP13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 SUMO3P55854 103 aaPredicted RBP13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 CAPRIN1Q14444 709 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 TRMT5Q32P41 509 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 NDUFAF6Q330K2 333 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 DCST1Q5T197 706 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 GCNT6Q5T4J0 391 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 TMEM211Q6ICI0 200 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 PEX5LQ8IYB4 626 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 C10orf111Q8N326 155 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 METTL25Q8N6Q8 603 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 PCYOX1LQ8NBM8 494 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 OR5M1Q8NGP8 315 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 OR5W2Q8NH69 310 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 RP9Q8TA86 221 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 ZBTB8AQ96BR9 441 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 LRRC58Q96CX6 371 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 WDYHV1Q96HA8 205 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 CCDC120Q96HB5 630 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 DMRTA2Q96SC8 542 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 KLHDC3Q9BQ90 382 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 PRDM14Q9GZV8 571 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 MED17Q9NVC6 651 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 CAMK2AQ9UQM7 478 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 ZNF337Q9Y3M9 751 aa13.14□□□□□ -0.31
SQSTM1-205ENST00000464493 OR2M5A3KFT3 312 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 C5orf58C9J3I9 102 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 ZG16O60844 167 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 CYP7B1O75881 506 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 UBTFL6P0CB48 400 aaPredicted RBP13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 ARAFP10398 606 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 CPN1P15169 458 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 RPS4Y1P22090 263 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 PTGER4P35408 488 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 LHX2P50458 406 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 MTPNP58546 118 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 CDK6Q00534 326 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 SKP2Q13309 424 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 CBFBQ13951 182 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 SELPLGQ14242 412 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 SF3B4Q15427 424 aaKnown RBP eCLIP13.13□□□□□ -0.314e-17■■■■■ 33.5
SQSTM1-205ENST00000464493 ADRM1Q16186 407 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 BCL2A1Q16548 175 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 TMEM44Q2T9K0 475 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 PLPPR5Q32ZL2 321 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 RPS26P11Q5JNZ5 115 aaPredicted RBP13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 PRAMEF8Q5VWM4 474 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 PRAMEF7Q5VXH5 474 aa13.13□□□□□ -0.31
SQSTM1-205ENST00000464493 NANOGP8Q6NSW7 305 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms