RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 NARS2Q96I59 477 aaKnown RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 ADAT1Q9BUB4 502 aaKnown RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 HRASLSQ9HDD0 168 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 CD93Q9NPY3 652 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 ING1Q9UK53 422 aaPredicted RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 ACSL5Q9ULC5 683 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 BACE2Q9Y5Z0 518 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 THY1P04216 161 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 RAB3BP20337 219 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 HTR1FP30939 366 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 PYCR1P32322 319 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 TSPAN31Q12999 210 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 HSD17B12Q53GQ0 312 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 C6orf132Q5T0Z8 1188 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 SPOUT1Q5T280 376 aaKnown RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 TRMT11Q7Z4G4 463 aaKnown RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 ARL14Q8N4G2 192 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 MEIOBQ8N635 442 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 MRPS24Q96EL2 167 aaKnown RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 GINS4Q9BRT9 223 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 ZNF768Q9H5H4 540 aaKnown RBP10.91□□□□□ -0.66
CPSF3-202ENST00000460593 ZMIZ1Q9ULJ6 1067 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 PCDHGA5Q9Y5G8 931 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 IRAK3Q9Y616 596 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 NPTNQ9Y639 398 aa10.91□□□□□ -0.66
CPSF3-202ENST00000460593 IRGMA1A4Y4 181 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 NFATC1O95644 943 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 AKR1A1P14550 325 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 NOS3P29474 1203 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 CCR9P51686 369 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 ERVK-25P63136 954 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 RASGRP3Q8IV61 690 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 OR1S1Q8NH92 325 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 HERVK_113Q902F9 699 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 LRRC46Q96FV0 321 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 LRIG1Q96JA1 1093 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 LYSMD1Q96S90 227 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 SLC25A18Q9H1K4 315 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 POLMQ9NP87 494 aaPredicted RBP10.9□□□□□ -0.66
CPSF3-202ENST00000460593 PRDM9Q9NQV7 894 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 ATPIF1Q9UII2 106 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 MRTO4Q9UKD2 239 aaKnown RBP10.9□□□□□ -0.66
CPSF3-202ENST00000460593 ZNF175Q9Y473 711 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 OR6C74A6NCV1 312 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 H3BSH0 61 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 TMEM189-UBE2V1I3L0A0 370 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 FOXE1O00358 373 aaPredicted RBP10.9□□□□□ -0.66
CPSF3-202ENST00000460593 FMO6PO60774 539 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 UBL3O95164 117 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 GSTM3P21266 225 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 AKR1C2P52895 323 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 AKR1C1Q04828 323 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 DUSP2Q05923 314 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 LINC00303Q3SY05 128 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 ZDHHC20Q5W0Z9 365 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 KIAA1211LQ6NV74 962 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 UBE2Q1Q7Z7E8 422 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 CMTM4Q8IZR5 234 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 ANKRD53Q8N9V6 530 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 OR51L1Q8NGJ5 315 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 GHSRQ92847 366 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 C12orf57Q99622 126 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 DPH1Q9BZG8 443 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 GLIPR2Q9H4G4 154 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 SCPEP1Q9HB40 452 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 MARK1Q9P0L2 795 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 COPZ2Q9P299 210 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 NFKBIL1Q9UBC1 381 aaPredicted RBP10.9□□□□□ -0.66
CPSF3-202ENST00000460593 CYB5R1Q9UHQ9 305 aa10.9□□□□□ -0.66
CPSF3-202ENST00000460593 EXOGQ9Y2C4 368 aaKnown RBP10.9□□□□□ -0.66
CPSF3-202ENST00000460593 ZNF106Q9H2Y7 1883 aaKnown RBP10.9□□□□□ -0.66
CPSF3-202ENST00000460593 UNC80Q8N2C7 3258 aa10.9□□□□□ -0.67
CPSF3-202ENST00000460593 A0A087WV48 116 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 SLC5A10A0PJK1 596 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 ANKRD61A6NGH8 418 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 KRBOX1C9JBD0 128 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 NRG2O14511 850 aaPredicted RBP10.89□□□□□ -0.67
CPSF3-202ENST00000460593 INPPL1O15357 1258 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 RLN2P04090 185 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 FGF2P09038 288 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 DCTDP32321 178 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 RPL3P39023 403 aaKnown RBP10.89□□□□□ -0.67
CPSF3-202ENST00000460593 CBX5P45973 191 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 SNRPD1P62314 119 aaKnown RBP10.89□□□□□ -0.67
CPSF3-202ENST00000460593 RPS15P62841 145 aaKnown RBP10.89□□□□□ -0.67
CPSF3-202ENST00000460593 TMEM115Q12893 351 aaPredicted RBP10.89□□□□□ -0.67
CPSF3-202ENST00000460593 AGERQ15109 404 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 TP53I3Q53FA7 332 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 ZNF311Q5JNZ3 666 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 ELP2Q6IA86 826 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 HEPHL1Q6MZM0 1159 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 CDC73Q6P1J9 531 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 C22orf39Q6P5X5 142 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 TMUB2Q71RG4 321 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 ZDHHC1Q8WTX9 485 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 SLC25A28Q96A46 364 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 SLC38A3Q99624 504 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 EFCAB11Q9BUY7 163 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 CDHR4A6H8M9 788 aa10.89□□□□□ -0.67
CPSF3-202ENST00000460593 GREM1O60565 184 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms