RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 CCDC159P0C7I6 412 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 ABCD3P28288 659 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 IL12BP29460 328 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 ETV5P41161 510 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 OMPP47874 163 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 NR1H2P55055 460 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 PLCXD2Q0VAA5 305 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 NCF4Q15080 339 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 FNDC7Q5VTL7 733 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 PRICKLE2Q7Z3G6 844 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 ZNF440Q8IYI8 595 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 ENTHD1Q8IYW4 607 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 PRR22Q8IZ63 422 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 RNF113BQ8IZP6 322 aaKnown RBP13.11□□□□□ -0.31
USP39-207ENST00000450066 DEPDC4Q8N2C3 294 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 GALNT6Q8NCL4 622 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 FAM71CQ8NEG0 241 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 OR8K3Q8NH51 312 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 NUBPLQ8TB37 319 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 FAM81AQ8TBF8 368 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 TMEM255BQ8WV15 326 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 TAAR9Q96RI9 348 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 DDA1Q9BW61 102 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 PARD6AQ9NPB6 346 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 TOR4AQ9NXH8 423 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 FLRT3Q9NZU0 649 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 NCDNQ9UBB6 729 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 LOC102723996A0A087X1L8 192 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 A0A0B4J2E0 115 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 A0A1B0GX12 115 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 SLC1A7O00341 560 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 CSO75390 466 aaKnown RBP13.11□□□□□ -0.31
USP39-207ENST00000450066 KLF7O75840 302 aaPredicted RBP13.11□□□□□ -0.31
USP39-207ENST00000450066 ANGPTL1O95841 491 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 TP53P04637 393 aaPredicted RBP13.11□□□□□ -0.31
USP39-207ENST00000450066 NGFRP08138 427 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 POU1F1P28069 291 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 GSSP48637 474 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 IDH2P48735 452 aaKnown RBP13.11□□□□□ -0.31
USP39-207ENST00000450066 PNLIPRP2P54317 469 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 GABARAPL2P60520 117 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 TSPAN31Q12999 210 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 NLGN4XQ8N0W4 816 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 UBE2FQ969M7 185 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 OMA1Q96E52 524 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 PRRX2Q99811 253 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 KRCC1Q9NPI7 259 aaPredicted RBP13.11□□□□□ -0.31
USP39-207ENST00000450066 RASSF1Q9NS23 344 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 RNF6Q9Y252 685 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 KIF26BQ2KJY2 2108 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 TEX51A0A1B0GUA7 166 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 H3BN98 237 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 STK17BO94768 372 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 NTN1O95631 604 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 MT-CO3P00414 261 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 CD63P08962 238 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 NRG3P56975 720 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 CDC42P60953 191 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 PIP4P1Q86T03 277 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 NRMQ8IXM6 262 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 PRSS33Q8NF86 280 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 RHOXF1Q8NHV9 184 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 C8orf44Q96CB5 159 aa13.1□□□□□ -0.31
USP39-207ENST00000450066 EXOSC3Q9NQT5 275 aaKnown RBP13.1□□□□□ -0.31
USP39-207ENST00000450066 A0A1B0GWA3 101 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 KLF4O43474 513 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 CHP2O43745 196 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 ICOSLGO75144 302 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 WBP4O75554 376 aaKnown RBP13.09□□□□□ -0.31
USP39-207ENST00000450066 SOX14O95416 240 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 UMODP07911 640 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 JMJD7P0C870 316 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 UBL4AP11441 157 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 TGM1P22735 817 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 EEF1B2P24534 225 aaKnown RBP13.09□□□□□ -0.31
USP39-207ENST00000450066 FPR3P25089 353 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 SLC26A5P58743 744 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 CSNK2BP67870 215 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 TEKQ02763 1124 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 EIF3IQ13347 325 aaKnown RBP13.09□□□□□ -0.31
USP39-207ENST00000450066 TMEM236Q5W0B7 351 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 ZNF773Q6PK81 442 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 APOOLQ6UXV4 268 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 WDR88Q6ZMY6 472 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 BPIFB6Q8NFQ5 453 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 OR2Y1Q8NGV0 311 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 TMEM239Q8WW34 195 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 APH1BQ8WW43 257 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 FAM46AQ96IP4 442 aaKnown RBP13.09□□□□□ -0.31
USP39-207ENST00000450066 MPP4Q96JB8 637 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 FAM192AQ9GZU8 254 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 POLR1BQ9H9Y6 1135 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 IMPAD1Q9NX62 359 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 AASSQ9UDR5 926 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 PISDQ9UG56 409 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 PTRH2Q9Y3E5 179 aaKnown RBP13.09□□□□□ -0.31
USP39-207ENST00000450066 TRBV11-1A0A0K0K1C0 115 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 A0A1W2PQD3 144 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 OR6C70A6NIJ9 312 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 IGFBP1P08833 259 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms