RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 FZD5Q13467 585 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 EFR3AQ14156 821 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 FGL2Q14314 439 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 GALEQ14376 348 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 PLBD1Q6P4A8 553 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 FAM111BQ6SJ93 734 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 VITQ6UXI7 678 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 CDK20Q8IZL9 346 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 LNX2Q8N448 690 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 FANK1Q8TC84 345 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 JPH3Q8WXH2 748 aaPredicted RBP10.51□□□□□ -0.73
USP4-205ENST00000431357 PAWRQ96IZ0 340 aaKnown RBP10.51□□□□□ -0.73
USP4-205ENST00000431357 SERINC2Q96SA4 455 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 PRSS27Q9BQR3 290 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 BEX2Q9BXY8 128 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 PIGUQ9H490 435 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 ZDHHC4Q9NPG8 344 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 SIDT1Q9NXL6 827 aaKnown RBP10.51□□□□□ -0.73
USP4-205ENST00000431357 ZNF223Q9UK11 482 aaPredicted RBP10.51□□□□□ -0.73
USP4-205ENST00000431357 PLEKHM1Q9Y4G2 1056 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 CLCA3PQ9Y6N3 262 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 DAPL1A0PJW8 107 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 URADA6NGE7 173 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 C5orf67F2Z3F1 127 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 BHLHE40O14503 412 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 MT-ND5P03915 603 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 ARSBP15848 533 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 TLX1P31314 330 aaPredicted RBP10.51□□□□□ -0.73
USP4-205ENST00000431357 CTBP2P56545 445 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 CSTF1Q05048 431 aaKnown RBP10.51□□□□□ -0.73
USP4-205ENST00000431357 MRPL28Q13084 256 aaKnown RBP10.51□□□□□ -0.73
USP4-205ENST00000431357 MADCAM1Q13477 382 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 RUNX3Q13761 415 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 ENPP2Q13822 863 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 IDNKQ5T6J7 187 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 PRPF38BQ5VTL8 546 aaKnown RBP10.51□□□□□ -0.73
USP4-205ENST00000431357 PAMR1Q6UXH9 720 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 USP53Q70EK8 1073 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 AMIGO1Q86WK6 493 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 ZNF619Q8N2I2 560 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 OR5W2Q8NH69 310 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 AKAP1Q92667 903 aaKnown RBP eCLIP10.51□□□□□ -0.73
USP4-205ENST00000431357 PMM1Q92871 262 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 SLC22A18Q96BI1 424 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 UPRTQ96BW1 309 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 SCARF2Q96GP6 870 aaPredicted RBP10.51□□□□□ -0.73
USP4-205ENST00000431357 SDF2Q99470 211 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 TRPM6Q9BX84 2022 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.51□□□□□ -0.73
USP4-205ENST00000431357 HDHD2Q9H0R4 259 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 ISG20L2Q9H9L3 353 aaKnown RBP10.51□□□□□ -0.73
USP4-205ENST00000431357 TRPV4Q9HBA0 871 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 FBXL21Q9UKT6 434 aa10.51□□□□□ -0.73
USP4-205ENST00000431357 NUMA1Q14980 2115 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 A0A1W2PP55 124 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 PLPP2O43688 288 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 ZGLP1P0C6A0 271 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 SLC35G6P0C7Q6 338 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 ZNF888P0CJ79 500 aaPredicted RBP10.5□□□□□ -0.73
USP4-205ENST00000431357 RPS4Y1P22090 263 aaKnown RBP10.5□□□□□ -0.73
USP4-205ENST00000431357 ACSL1P33121 698 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 GJA4P35212 333 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 PTGS2P35354 604 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 DUSP5Q16690 384 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 Q5BKY6 102 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 SNAP47Q5SQN1 464 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 TMPRSS11FQ6ZWK6 438 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 VN1R4Q7Z5H5 301 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 TMEM239Q8WW34 195 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 LCN9Q8WX39 176 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 COL26A1Q96A83 441 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 RFT1Q96AA3 541 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 NDC1Q9BTX1 674 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 APOOQ9BUR5 198 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 ZNF350Q9GZX5 532 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 CMC2Q9NRP2 79 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 CXXC1Q9P0U4 656 aaPredicted RBP10.5□□□□□ -0.73
USP4-205ENST00000431357 BAIAP2Q9UQB8 552 aa10.5□□□□□ -0.73
USP4-205ENST00000431357 FAM183AA6NL82 134 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 PRR23D1E9PI22 279 aaPredicted RBP10.49□□□□□ -0.73
USP4-205ENST00000431357 STX11O75558 287 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 AK1P00568 194 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 APODP05090 189 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 PRR23D2P0DMB1 279 aaPredicted RBP10.49□□□□□ -0.73
USP4-205ENST00000431357 SMIM10L1P0DMW3 83 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 IFI30P13284 250 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 GLULP15104 373 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 PRKACAP17612 351 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 HK1P19367 917 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 NPR2P20594 1047 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 ZNF10P21506 573 aaPredicted RBP10.49□□□□□ -0.73
USP4-205ENST00000431357 SLC6A1P30531 599 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 AP2S1P53680 142 aaPredicted RBP10.49□□□□□ -0.73
USP4-205ENST00000431357 GALK2Q01415 458 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 INSL4Q14641 139 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 OR1Q1Q15612 314 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 ZNF776Q68DI1 518 aaPredicted RBP10.49□□□□□ -0.73
USP4-205ENST00000431357 SDE2Q6IQ49 451 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 ZCCHC12Q6PEW1 402 aa10.49□□□□□ -0.73
USP4-205ENST00000431357 ZNF767PQ75MW2 155 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms