RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MS4A4EQ96PG1 132 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 OR2A5Q96R48 311 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 TNFRSF13CQ96RJ3 184 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 CD180Q99467 661 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 NKX3-1Q99801 234 aaPredicted RBP12.44□□□□□ -0.42
VPS54-203ENST00000409558 PLSCR3Q9NRY6 295 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 CD207Q9UJ71 328 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 ZNF670-ZNF695F2Z2N8 137 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 C5orf67F2Z3F1 127 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 HTR2AP28223 471 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 SHC1P29353 583 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 TSPAN31Q12999 210 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 NFATC4Q14934 902 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 TBRG1Q3YBR2 411 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 TP53I3Q53FA7 332 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 ACOT11Q8WXI4 607 aaPredicted RBP12.44□□□□□ -0.42
VPS54-203ENST00000409558 GAL3ST3Q96A11 431 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 C11orf54Q9H0W9 315 aaPredicted RBP12.44□□□□□ -0.42
VPS54-203ENST00000409558 MSRAQ9UJ68 235 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 DTX4Q9Y2E6 619 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 ADAM18Q9Y3Q7 739 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 ZDBF2Q9HCK1 2354 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 DPM1O60762 260 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 HNRNPA2B1P22626 353 aaKnown RBP12.44□□□□□ -0.42
VPS54-203ENST00000409558 PSMB10P40306 273 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 OMPP47874 163 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 CENPAP49450 140 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 RPS15AP62244 130 aaKnown RBP12.44□□□□□ -0.42
VPS54-203ENST00000409558 HHEXQ03014 270 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 KCNAB1Q14722 419 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 PGGHGQ32M88 737 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 PRPF38BQ5VTL8 546 aaKnown RBP12.44□□□□□ -0.42
VPS54-203ENST00000409558 FCRL6Q6DN72 434 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 FAM26EQ8N5C1 309 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 FAM174AQ8TBP5 190 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 TOE1Q96GM8 510 aaKnown RBP12.44□□□□□ -0.42
VPS54-203ENST00000409558 TP63Q9H3D4 680 aaPredicted RBP12.44□□□□□ -0.42
VPS54-203ENST00000409558 LSM2Q9Y333 95 aaKnown RBP12.44□□□□□ -0.42
VPS54-203ENST00000409558 TP53BP1Q12888 1972 aaPredicted RBP12.44□□□□□ -0.42
VPS54-203ENST00000409558 HYKKA2RU49 373 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 SNTNA6NMZ2 147 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 TAF4O00268 1085 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 KHNYNO15037 678 aaKnown RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 RPP14O95059 124 aaKnown RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 ABATP80404 500 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 CRMP1Q14194 572 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 NKAIN2Q5VXU1 208 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 OAFQ86UD1 273 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 CDK20Q8IZL9 346 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 RFLNBQ8N5W9 214 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 GAL3ST4Q96RP7 486 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 TAPBPLQ9BX59 468 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 NEK6Q9HC98 313 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 ADAM29Q9UKF5 820 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 SIRT4Q9Y6E7 314 aaPredicted RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 SPACA6W5XKT8 324 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 BLOC1S5-TXNDC5H3BN57 136 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 RFPL3O75679 317 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 CHRNB1P11230 501 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 IMPDH2P12268 514 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 FRKP42685 505 aaPredicted RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 SNRPD2P62316 118 aaKnown RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 COX10Q12887 443 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 MLLT11Q13015 90 aaPredicted RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 ELOAQ14241 798 aaKnown RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 ZNF425Q6IV72 752 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 RANBP3LQ86VV4 465 aaPredicted RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 TMEM239Q8WW34 195 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 GIMAP5Q96F15 307 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 BCL7BQ9BQE9 202 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 NRSN2Q9GZP1 204 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 SIDT1Q9NXL6 827 aaKnown RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 TAS2R7Q9NYW3 318 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 GTF2A1LQ9UNN4 478 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 CCDC182A6NF36 153 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 DUXAA6NLW8 204 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 THEGLP0DJG4 465 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 OR12D2P58182 307 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 CDK5Q00535 292 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 CCDC190Q86UF4 302 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 Q8N402 240 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 ZNF433Q8N7K0 673 aaPredicted RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 KIAA1958Q8N8K9 716 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 OR52E2Q8NGJ4 325 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 MMABQ96EY8 250 aaPredicted RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 MTHFD2LQ9H903 347 aaPredicted RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 NDUFB11Q9NX14 153 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 NKIRAS2Q9NYR9 191 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 CCDC59Q9P031 241 aaKnown RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 DIMT1Q9UNQ2 313 aaKnown RBP12.43□□□□□ -0.42
VPS54-203ENST00000409558 C2orf16Q68DN1 1984 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 SDK2Q58EX2 2172 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 GABRPO00591 440 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 ADAM11O75078 769 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 STX11O75558 287 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 SEMA4FO95754 770 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 GSTM3P21266 225 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 EMDP50402 254 aa12.43□□□□□ -0.42
VPS54-203ENST00000409558 PSPHP78330 225 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms