RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 A0A0G2JMZ2 1700 aa13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 EPOPA6NHQ4 379 aa13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 VSTM2BA6NLU5 285 aa13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 EIF1AYO14602 144 aaKnown RBP13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 PPP1R3DO95685 299 aa13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 PLGP00747 810 aaPredicted RBP13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 PRPH2P23942 346 aa13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 CHMP24386 653 aa13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 ZNF791Q3KP31 576 aaPredicted RBP13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 TBRG1Q3YBR2 411 aa13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 KLBQ86Z14 1044 aa13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 PAPD5Q8NDF8 572 aaKnown RBP13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 OR6C1Q96RD1 312 aa13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 TP63Q9H3D4 680 aaPredicted RBP13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 A4GALTQ9NPC4 353 aa13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 HSPB11Q9Y547 144 aa13.24□□□□□ -0.29
SHROOM1-203ENST00000378679 ASPDHA6ND91 283 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 UBL4AP11441 157 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 F8A1P23610 371 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 MAP3K8P41279 467 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 PDX1P52945 283 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 GFERP55789 205 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 OR1Q1Q15612 314 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 ZNF691Q5VV52 312 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 RBM45Q8IUH3 476 aaKnown RBP13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 ASB12Q8WXK4 309 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 SENP5Q96HI0 755 aaPredicted RBP13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 VDAC3Q9Y277 283 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 PCDHGA3Q9Y5H0 932 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 FGF17O60258 216 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 TFF2Q03403 129 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 PAMR1Q6UXH9 720 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 ZNF517Q6ZMY9 492 aaPredicted RBP13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 Q7L0L9 218 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 B3GNT7Q8NFL0 401 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 PHOX2BQ99453 314 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 AMBRA1Q9C0C7 1298 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 OR10A5Q9H207 317 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 ATXN7L1Q9ULK2 861 aaPredicted RBP13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 CORINQ9Y5Q5 1042 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 SPTBP11277 2137 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 FAM183AA6NL82 134 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 WWP2O00308 870 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 SPARCP09486 303 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 ITGAMP11215 1152 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 CD1CP29017 333 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 SOX2P48431 317 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 RHAGQ02094 409 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 APOFQ13790 326 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 DUSP5Q16690 384 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 ULK3Q6PHR2 472 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 CHST4Q8NCG5 386 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 LYRM4Q9HD34 91 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 SSNA1O43805 119 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 ITGA10O75578 1167 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 PRKCAP17252 672 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 GRPRP30550 384 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 SLC6A9P48067 706 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 RAET1LQ5VY80 246 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 Q6ZNX1 250 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 CNRIP1Q96F85 164 aaPredicted RBP13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 BEX1Q9HBH7 125 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 SLC35A3Q9Y2D2 325 aa13.23□□□□□ -0.29
SHROOM1-203ENST00000378679 KCNE1BA0A087WTH5 132 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 NRG2O14511 850 aaPredicted RBP13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 ADAM23O75077 832 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 SLITRK5O94991 958 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 ACVR1BP36896 505 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 PIGAP37287 484 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 RAB15P59190 212 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 GPLD1P80108 840 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 FGL2Q14314 439 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 SF3B4Q15427 424 aaKnown RBP eCLIP13.22□□□□□ -0.294e-10■■■■□ 25.6
SHROOM1-203ENST00000378679 MAMDC2Q7Z304 686 aaPredicted RBP13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 KIAA0907Q7Z7F0 614 aaPredicted RBP13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 TIGD4Q8IY51 512 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 OR8H3Q8N146 312 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 OR1F2PQ96R84 312 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 HDHD5Q9BXW7 423 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 OR52D1Q9H346 318 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 TMEM185BQ9H7F4 350 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 CLEC1BQ9P126 229 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 APC2O95996 2303 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 A0A075B6Q4 140 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 A0A1W2PPK0 400 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 LMO7DNF2Z398 122 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 ANKRD28O15084 1053 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 GALR3O60755 368 aaPredicted RBP13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 WISP3O95389 354 aaPredicted RBP13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 HTR1AP08908 422 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 PEPDP12955 493 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 C22orf42Q6IC83 251 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 PLEKHG7Q6ZR37 379 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 PAQR7Q86WK9 346 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 UBALD2Q8IYN6 164 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 UBQLNLQ8IYU4 475 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 NEIL3Q8TAT5 605 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 ELF4Q99607 663 aaPredicted RBP13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 NIPSNAP1Q9BPW8 284 aa13.22□□□□□ -0.29
SHROOM1-203ENST00000378679 PISDQ9UG56 409 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms