RNA–Protein interactions for RNA: ENST00000376568.7

DDR1-225, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene DDR1, Length 3,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-225	ENST00000376568	SIRPA	P78324	504 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	LIN52	Q52LA3	116 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	RNASE12	Q5GAN4	147 aa	Known RBP	12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	GALNTL5	Q7Z4T8	443 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	LRRC56	Q8IYG6	542 aa	Predicted RBP	12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	MOAP1	Q96BY2	351 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	C6orf62	Q9GZU0	229 aa	Predicted RBP	12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	EPS8L2	Q9H6S3	715 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	NPIPA1	Q9UND3	350 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	DNAH14	Q0VDD8	3507 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	TSC2	P49815	1807 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568		A0A1W2PPL8	197 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	KCNK2	O95069	426 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	ANXA8	P13928	327 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	PGC	P20142	388 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	EEF1A1	P68104	462 aa	Known RBP	12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	CFHR1	Q03591	330 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	RNF220	Q5VTB9	566 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	SPINK14	Q6IE38	97 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	LCN8	Q6JVE9	175 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	ZNF550	Q7Z398	422 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	OR1N1	Q8NGS0	311 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	OR13C2	Q8NGS9	318 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	CHCHD6	Q9BRQ6	235 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	UTP23	Q9BRU9	249 aa	Known RBP	12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	PIGU	Q9H490	435 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	FBXL4	Q9UKA2	621 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	IFNG	P01579	166 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	ACVR2A	P27037	513 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	RPS27	P42677	84 aa	Known RBP	12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	SSR4	P51571	173 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	TRA2B	P62995	288 aa	Known RBP	12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	LSM11	P83369	360 aa	Known RBP eCLIP	12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	SDR9C7	Q8NEX9	313 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	OR10G3	Q8NGC4	313 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	CT55	Q8WUE5	264 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	TAAR9	Q96RI9	348 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	COPS4	Q9BT78	406 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	RALY	Q9UKM9	306 aa	Known RBP	12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	CCL27	Q9Y4X3	112 aa		12.51	□□□□□ -0.41
DDR1-225	ENST00000376568	CCDC163	A0A0D9SF12	145 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	SEC14L2	O76054	403 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	PCGF2	P35227	344 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	CAPG	P40121	348 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	CYB561	P49447	251 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	STK11	Q15831	433 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	PLBD1	Q6P4A8	553 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	CBLN3	Q6UW01	205 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	KBTBD2	Q8IY47	623 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	FANK1	Q8TC84	345 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	WNK2	Q9Y3S1	2297 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	SNRNP200	O75643	2136 aa	Known RBP	12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	ANKRD28	O15084	1053 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	GSTM2	P28161	218 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	UTS2B	Q765I0	119 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	BCORP1	Q8N888	145 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	OR14A16	Q8NHC5	309 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	SMAP2	Q8WU79	429 aa	Predicted RBP	12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	TSC22D3	Q99576	134 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	MUC13	Q9H3R2	512 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	LYRM4	Q9HD34	91 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	GRHPR	Q9UBQ7	328 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	SULT2B1	O00204	365 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	RRP8	O43159	456 aa	Known RBP	12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	ZNF264	O43296	627 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	SNX4	O95219	450 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	GPX2	P18283	190 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	DPP4	P27487	766 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	EIF2S3	P41091	472 aa	Known RBP	12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	MAN2A2	P49641	1150 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	SHQ1	Q6PI26	577 aa	Known RBP	12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	SLC23A3	Q6PIS1	610 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	DEPDC4	Q8N2C3	294 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	TEX19	Q8NA77	164 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	OR6N2	Q8NGY6	317 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	ZNF501	Q96CX3	271 aa	Predicted RBP	12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	C19orf43	Q9BQ61	176 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	RBM24	Q9BX46	236 aa	Known RBP	12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	C19orf53	Q9UNZ5	99 aa	Predicted RBP	12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	IER3IP1	Q9Y5U9	82 aa		12.5	□□□□□ -0.41
DDR1-225	ENST00000376568	CCDC168	Q8NDH2	2452 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	TPO	P07202	933 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	SOX3	P41225	446 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	PRKX	P51817	358 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	RNF4	P78317	190 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	TLE3	Q04726	772 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	PUM1	Q14671	1186 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	MAPK14	Q16539	360 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	DDI2	Q5TDH0	399 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	LACC1	Q8IV20	430 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	TOR1AIP2	Q8NFQ8	470 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	C1QTNF6	Q9BXI9	259 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	AMBRA1	Q9C0C7	1298 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	WBP11	Q9Y2W2	641 aa	Known RBP	12.49	□□□□□ -0.41
DDR1-225	ENST00000376568		A0A1B0GWA3	101 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	NPIPA2	E9PIF3	369 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	NPIPA3	F8WFD2	350 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568	TMX2-CTNND1	H3BSU7	103 aa		12.49	□□□□□ -0.41
DDR1-225	ENST00000376568		J3QLW9	94 aa		12.49	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms