RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 DCST2Q5T1A1 773 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 PNCKQ6P2M8 343 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 RHBDF1Q96CC6 855 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 APOOQ9BUR5 198 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 KLHL13Q9P2N7 655 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 C2orf72A6NCS6 295 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 CEBPZOSA8MTT3 80 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 RING1Q06587 406 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 PAN3Q58A45 887 aaKnown RBP12.9□□□□□ -0.34
COL4A1-201ENST00000375820 SLC39A5Q6ZMH5 540 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 DTWD1Q8N5C7 304 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 SFXN5Q8TD22 340 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 C7orf43Q8WVR3 580 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 ATOH1Q92858 354 aaPredicted RBP12.9□□□□□ -0.34
COL4A1-201ENST00000375820 NT5C3BQ969T7 300 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 TSPAN10Q9H1Z9 355 aaPredicted RBP12.9□□□□□ -0.34
COL4A1-201ENST00000375820 WDR6Q9NNW5 1121 aaKnown RBP12.9□□□□□ -0.34
COL4A1-201ENST00000375820 CENPBD1B2RD01 187 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 H7C1C5 153 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 PRKYO43930 277 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 ONECUT3O60422 494 aaPredicted RBP12.9□□□□□ -0.34
COL4A1-201ENST00000375820 JRKO75564 520 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 IFNA17P01571 189 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 F3P13726 295 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 LCN6P62502 163 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 TMEM239Q8WW34 195 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 LRIG1Q96JA1 1093 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 HRH4Q9H3N8 390 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 PLCXD1Q9NUJ7 323 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 ZNF736B4DX44 427 aaPredicted RBP12.9□□□□□ -0.34
COL4A1-201ENST00000375820 ZNF33BQ06732 778 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 COX15Q7KZN9 410 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 OR52E1Q8NGJ3 308 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 SHISA4Q96DD7 197 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 TXNDC15Q96J42 360 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 HERPUD2Q9BSE4 406 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 DMRT3Q9NQL9 472 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 BIN3Q9NQY0 253 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 ZNF355PQ9NSJ1 428 aa12.9□□□□□ -0.34
COL4A1-201ENST00000375820 F13BP05160 661 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 SNRNP70P08621 437 aaKnown RBP12.89□□□□□ -0.35
COL4A1-201ENST00000375820 DPY19L2P1Q6NXN4 242 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 SERINC5Q86VE9 423 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 ST7LQ8TDW4 575 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 PCNPQ8WW12 178 aaKnown RBP12.89□□□□□ -0.35
COL4A1-201ENST00000375820 C22orf15Q8WYQ4 148 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 MED20Q9H944 212 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 ENPP4Q9Y6X5 453 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 MYH6P13533 1939 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 APBB3O95704 486 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 RPA2P15927 270 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 HNRNPA2B1P22626 353 aaKnown RBP12.89□□□□□ -0.35
COL4A1-201ENST00000375820 HMGCLP35914 325 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 RRAS2P62070 204 aaPredicted RBP12.89□□□□□ -0.35
COL4A1-201ENST00000375820 CDK3Q00526 305 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 TDGQ13569 410 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 SF3A2Q15428 464 aaKnown RBP12.89□□□□□ -0.35
COL4A1-201ENST00000375820 SLC9A3R2Q15599 337 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 C2orf76Q3KRA6 126 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 KDM1BQ8NB78 822 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 TINAGL1Q9GZM7 467 aaPredicted RBP12.89□□□□□ -0.35
COL4A1-201ENST00000375820 FOLH1BQ9HBA9 442 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 OLAHQ9NV23 265 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 CD300AQ9UGN4 299 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 MAN2B1O00754 1011 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 GPR37L1O60883 481 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 MYF6P23409 242 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 WNT4P56705 351 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 TMEM184AQ6ZMB5 413 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 TMEM135Q86UB9 458 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 CCDC71Q8IV32 467 aaPredicted RBP12.89□□□□□ -0.35
COL4A1-201ENST00000375820 VRK1Q99986 396 aaPredicted RBP12.89□□□□□ -0.35
COL4A1-201ENST00000375820 KIF1AQ12756 1690 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 SLC16A7O60669 478 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 AK1P00568 194 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 EMP2P54851 167 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 TAS2R20P59543 309 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 SELENOWP63302 87 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 CDK5R2Q13319 367 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 FAM57BQ71RH2 274 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 TAS1R1Q7RTX1 841 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 BATF2Q8N1L9 274 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 VWA5B2Q8N398 1253 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 FNDC8Q8TC99 324 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 GTF2H4Q92759 462 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 G3V2L1 256 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 POLR1CO15160 346 aaPredicted RBP12.89□□□□□ -0.35
COL4A1-201ENST00000375820 ATG12O94817 140 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 MANEALQ5VSG8 457 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 ZNF836Q6ZNA1 936 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 GPR26Q8NDV2 337 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 OR7G3Q8NG95 312 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 CD200R1Q8TD46 325 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 TOE1Q96GM8 510 aaKnown RBP12.89□□□□□ -0.35
COL4A1-201ENST00000375820 IL26Q9NPH9 171 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 MYH7P12883 1935 aa12.89□□□□□ -0.35
COL4A1-201ENST00000375820 HNRNPA1P09651 372 aaKnown RBP eCLIP12.88□□□□□ -0.35
COL4A1-201ENST00000375820 OR1D4P47884 311 aa12.88□□□□□ -0.35
COL4A1-201ENST00000375820 CSNK1A1P48729 337 aa12.88□□□□□ -0.35
COL4A1-201ENST00000375820 DAP3P51398 398 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms