RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SCG5P05408 212 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 APEX1P27695 318 aaKnown RBP10.83□□□□□ -0.68
VPS39-201ENST00000318006 GABRA3P34903 492 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 DAPP51397 102 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 ERVFC1P60507 584 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 RACK1P63244 317 aaKnown RBP10.83□□□□□ -0.68
VPS39-201ENST00000318006 MAP4K2Q12851 820 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 DUSP6Q16828 381 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 TP53I3Q53FA7 332 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 TMEM35AQ53FP2 167 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 PAPD4Q6PIY7 484 aaKnown RBP10.83□□□□□ -0.68
VPS39-201ENST00000318006 TMEM107Q6UX40 140 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 BEND4Q6ZU67 534 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 SSX9Q7RTT3 188 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 OR2T4Q8NH00 348 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 ZNF417Q8TAU3 575 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 MZB1Q8WU39 189 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 SMPDL3BQ92485 455 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 ZBTB8AQ96BR9 441 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 GSX2Q9BZM3 304 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 HRH4Q9H3N8 390 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 HCFC1R1Q9NWW0 138 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 CNIH4Q9P003 139 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 HSFX1Q9UBD0 423 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 PCDHGA6Q9Y5G7 932 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 CSNK1G3Q9Y6M4 447 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 ARAP2Q8WZ64 1704 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 COL4A1P02462 1669 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 TCRBV21S2A2A0A5A6 115 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 PPP6CO00743 305 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 KHNYNO15037 678 aaKnown RBP10.83□□□□□ -0.68
VPS39-201ENST00000318006 PSMB1P20618 241 aaKnown RBP10.83□□□□□ -0.68
VPS39-201ENST00000318006 GABRA5P31644 462 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 RGRP47804 291 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 TAS2R38P59533 333 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 SORDQ00796 357 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 DEFB134Q4QY38 66 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 RPS26P11Q5JNZ5 115 aaPredicted RBP10.83□□□□□ -0.68
VPS39-201ENST00000318006 ZNF551Q7Z340 670 aaPredicted RBP10.83□□□□□ -0.68
VPS39-201ENST00000318006 PLA2G15Q8NCC3 412 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 FOXRED1Q96CU9 486 aaPredicted RBP10.83□□□□□ -0.68
VPS39-201ENST00000318006 MSLNLQ96KJ4 702 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 PRRT1Q99946 306 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 MICU1Q9BPX6 476 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 CLMPQ9H6B4 373 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 FBXO8Q9NRD0 319 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 BABAM2Q9NXR7 383 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 HCSTQ9UBK5 93 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 ZNF850A8MQ14 1090 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 GABRPO00591 440 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 ACP2P11117 423 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 ADRA1AP35348 466 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 RAB28P51157 221 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 PPA1Q15181 289 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 APOOLQ6UXV4 268 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 FAM122BQ7Z309 247 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 SERPINA12Q8IW75 414 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 LSMEM2Q8N112 164 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 SUMF2Q8NBJ7 301 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 OR4C15Q8NGM1 316 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 G6PC3Q9BUM1 346 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 PINK1Q9BXM7 581 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 SAP130Q9H0E3 1048 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 WASF3Q9UPY6 502 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 RAB19A4D1S5 217 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 C11orf98E9PRG8 122 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 E2F3O00716 465 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 SLC7A9P82251 487 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 MEF2DQ14814 521 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 ARL6IP1Q15041 203 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 ELOCQ15369 112 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 PLK5Q496M5 336 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 CATSPEREQ5SY80 951 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 C3orf33Q6P1S2 294 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 ZER1Q7Z7L7 766 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 CLEC14AQ86T13 490 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 PTRH1Q86Y79 214 aaKnown RBP10.82□□□□□ -0.68
VPS39-201ENST00000318006 OR6N1Q8NGY5 312 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 TMEM163Q8TC26 289 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 SLC46A2Q9BY10 475 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 CPEB1Q9BZB8 566 aaKnown RBP10.82□□□□□ -0.68
VPS39-201ENST00000318006 IL21RQ9HBE5 538 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 GMPR2Q9P2T1 348 aaKnown RBP10.82□□□□□ -0.68
VPS39-201ENST00000318006 SERTAD3Q9UJW9 196 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 LSM5Q9Y4Y9 91 aaKnown RBP10.82□□□□□ -0.68
VPS39-201ENST00000318006 NME7Q9Y5B8 376 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 FEZF1A0PJY2 475 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 C9J4A7 227 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 GAPDHSO14556 408 aaPredicted RBP10.82□□□□□ -0.68
VPS39-201ENST00000318006 UGDHO60701 494 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 CPNE6O95741 557 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 TGM4P49221 684 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 FLI1Q01543 452 aaPredicted RBP10.82□□□□□ -0.68
VPS39-201ENST00000318006 KCTD11Q693B1 232 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 RASGRP3Q8IV61 690 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 SLC35F2Q8IXU6 374 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 ACVR1CQ8NER5 493 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 HRASLS5Q96KN8 279 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 TOX2Q96NM4 488 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 OR14A2Q96R54 314 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms