RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ETV3LQ6ZN32 361 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 NRARPQ7Z6K4 114 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 PLPP5Q8NEB5 264 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 OR2T35Q8NGX2 323 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 OR56B4Q8NH76 319 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 OR1E3Q8WZA6 343 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 HHIPQ96QV1 700 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 CDC6Q99741 560 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 TAPBPLQ9BX59 468 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 GSX2Q9BZM3 304 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 HMX1Q9NP08 348 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 MRPS30Q9NP92 439 aaKnown RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 SIPA1L1O43166 1804 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 ZNF816-ZNF321PA0A0X1KG74 233 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 A0A1B0GTW7 788 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 TRBC2A0A5B9 178 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 ASPDHA6ND91 283 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 RNF212BA8MTL3 300 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 F5H5P2 479 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 TLR5O60602 858 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 MED6O75586 246 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 KCNK5O95279 499 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 CDK2P24941 298 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SLC6A12P48065 614 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 KCNQ1P51787 676 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 MLLT10P55197 1068 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 ABRAXAS2Q15018 415 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 CEBPEQ15744 281 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 VWA1Q6PCB0 445 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 BRAT1Q6PJG6 821 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 ZNF679Q8IYX0 411 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 OR6V1Q8N148 313 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 DCBLD1Q8N8Z6 715 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 OR13C4Q8NGS5 318 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 GRHL3Q8TE85 626 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 OSTF1Q92882 214 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 RASD2Q96D21 266 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SLC41A2Q96JW4 573 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 MARVELD1Q9BSK0 173 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 TAS2R16Q9NYV7 291 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 KCND3Q9UK17 655 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 UBE2J1Q9Y385 318 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 PTGESO14684 152 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 TNFRSF10BO14763 440 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 DFFBO76075 338 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 AK1P00568 194 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 PDGFAP04085 211 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 DRD2P14416 443 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 AMY2BP19961 511 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 PIGAP37287 484 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 CD96P40200 585 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 GZMMP51124 257 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SSBP1Q04837 148 aaKnown RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 TIGD5Q53EQ6 642 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 TBPL2Q6SJ96 375 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 ZNF836Q6ZNA1 936 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 NANOGP1Q8N7R0 232 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 LSMEM1Q8N8F7 131 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SIDT2Q8NBJ9 832 aaKnown RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 FRS2Q8WU20 508 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 CORO2AQ92828 525 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 C20orf24Q9BUV8 137 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SLC6A17Q9H1V8 727 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 NSUN3Q9H649 340 aaKnown RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 ZDHHC6Q9H6R6 413 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 A0A1W2PQH9 124 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 HOXC11O43248 304 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 KCNK2O95069 426 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 INHAP05111 366 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 CTSEP14091 401 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SOX2P48431 317 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 STK19P49842 368 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 FOXA1P55317 472 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 PITX1P78337 314 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 REEP5Q00765 189 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SNTB2Q13425 540 aaKnown RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 HYAL4Q2M3T9 481 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 BCL7AQ4VC05 210 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 PLAC9Q5JTB6 97 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SLC29A4Q7RTT9 530 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 RANBP3LQ86VV4 465 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 RASGRP3Q8IV61 690 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 NAXDQ8IW45 347 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 ADGRF3Q8IZF5 1079 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 TMEM156Q8N614 296 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SLC5A8Q8N695 610 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 OR56A1Q8NGH5 318 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SFXN5Q8TD22 340 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 NSUN5Q96P11 429 aaKnown RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 CCNL2Q96S94 520 aaPredicted RBP6.04□□□□□ -1.44
VPS35-201ENST00000299138 ALOXE3Q9BYJ1 711 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SEC61A2Q9H9S3 476 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 GAB2Q9UQC2 676 aa6.04□□□□□ -1.44
VPS35-201ENST00000299138 SIP14410 1827 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 C7orf66A4D0T2 115 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 B4GAT1O43505 415 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 DUSP11O75319 330 aaKnown RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 CD1AP06126 327 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 F3P13726 295 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 RAC2P15153 192 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms