RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 COL26A1Q96A83 441 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 WBP1Q96G27 269 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 GAL3ST1Q99999 423 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.39□□□□□ -0.27
SDC1-201ENST00000254351 LRRN3Q9H3W5 708 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 SIRT3Q9NTG7 399 aaPredicted RBP13.39□□□□□ -0.27
SDC1-201ENST00000254351 CYB5R1Q9UHQ9 305 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 LHX6Q9UPM6 363 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 SZT2Q5T011 3432 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 A0A1B0GVI7 797 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 PRG2P13727 222 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 RAB3BP20337 219 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 F8A1P23610 371 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 EFNB1P98172 346 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 C11orf88Q6PI97 169 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 UBE2Q1Q7Z7E8 422 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 OR5J2Q8NH18 312 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 LGALS14Q8TCE9 139 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 TM4SF18Q96CE8 201 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 MNTQ99583 582 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 NPAS1Q99742 590 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 NKX3-1Q99801 234 aaPredicted RBP13.39□□□□□ -0.27
SDC1-201ENST00000254351 CWH43Q9H720 699 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 CAPN10Q9HC96 672 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 ATPIF1Q9UII2 106 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 ASF1AQ9Y294 204 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 FCMRO60667 390 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 NOS3P29474 1203 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 AADACL4Q5VUY2 407 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 RNLSQ5VYX0 342 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 OR52I2Q8NH67 350 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 OR56B4Q8NH76 319 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 ACOT12Q8WYK0 555 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 FGF11Q92914 225 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 LRRC46Q96FV0 321 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 USB1Q9BQ65 265 aaKnown RBP13.39□□□□□ -0.27
SDC1-201ENST00000254351 ZNF649Q9BS31 505 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 ZCCHC4Q9H5U6 513 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 A4GALTQ9NPC4 353 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 CD93Q9NPY3 652 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 OR10H1Q9Y4A9 318 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 VWA8A3KMH1 1905 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 K7ESM1 405 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 SCAMP1O15126 338 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 CASC3O15234 703 aaKnown RBP13.38□□□□□ -0.27
SDC1-201ENST00000254351 SLC16A5O15375 505 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 C1orf105O95561 183 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 CCND3P30281 292 aaPredicted RBP13.38□□□□□ -0.27
SDC1-201ENST00000254351 MTNR1BP49286 362 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 HSD17B12Q53GQ0 312 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 RGS7BPQ6MZT1 257 aaPredicted RBP13.38□□□□□ -0.27
SDC1-201ENST00000254351 NXPE4Q6UWF7 544 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 BTN2A1Q7KYR7 527 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 SLC9B2Q86UD5 537 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 CACUL1Q86Y37 369 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 HDDC3Q8N4P3 179 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 POGLUT1Q8NBL1 392 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 OR10Z1Q8NGY1 313 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 OR51A7Q8NH64 312 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 C2CD4CQ8TF44 421 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 RAD51AP1Q96B01 352 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 CXorf40BQ96DE9 158 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 BBS4Q96RK4 519 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 PDCD1LG2Q9BQ51 273 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 GPR174Q9BXC1 333 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 RETREG1Q9H6L5 497 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 TMEM138Q9NPI0 162 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 TRIM36Q9NQ86 728 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 ASB4Q9Y574 426 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 IGLV3-16A0A075B6K0 115 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 SOCS5O75159 536 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 GRPRP30550 384 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 DCTDP32321 178 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 PSMB10P40306 273 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 PRMT2P55345 433 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 AGERQ15109 404 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 C2orf68Q2NKX9 166 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 LRRC37A5PQ49AS3 106 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 ZDHHC20Q5W0Z9 365 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 ZFP82Q8N141 532 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 PIGXQ8TBF5 258 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 HGDQ93099 445 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 PRRC1Q96M27 445 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 OR14A2Q96R54 314 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 C12orf57Q99622 126 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 ZNF559Q9BR84 538 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 NOX3Q9HBY0 568 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 GMEB2Q9UKD1 530 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 LIPT1Q9Y234 373 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 BACE2Q9Y5Z0 518 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 KNL1Q8NG31 2342 aa13.38□□□□□ -0.27
SDC1-201ENST00000254351 KDM4EB2RXH2 506 aaPredicted RBP13.37□□□□□ -0.27
SDC1-201ENST00000254351 GLAP06280 429 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 HLA-FP30511 346 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 CAMK1Q14012 370 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 HLXQ14774 488 aaPredicted RBP13.37□□□□□ -0.27
SDC1-201ENST00000254351 ATXN7L3Q14CW9 347 aaPredicted RBP13.37□□□□□ -0.27
SDC1-201ENST00000254351 ARSIQ5FYB1 569 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 SSX6Q7RTT6 188 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 OR5AR1Q8NGP9 310 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms