RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 BTBD2Q9BX70 525 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 OR10A4Q9H209 315 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 PRSS16Q9NQE7 514 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 PARPBPQ9NWS1 579 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 ENPP4Q9Y6X5 453 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 CXCL10P02778 98 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 CTRB1P17538 263 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 BCL2L15Q5TBC7 163 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 CPZQ66K79 652 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 CTRB2Q6GPI1 263 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 RTL6Q6ICC9 239 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 TEX26Q8N6G2 289 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 UBTD2Q8WUN7 234 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 NME7Q9Y5B8 376 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 SCN7AQ01118 1682 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 ZNF705GA8MUZ8 300 aaPredicted RBP12.01□□□□□ -0.49
USP40-201ENST00000251722 ZNF705FA8MVS1 300 aaPredicted RBP12.01□□□□□ -0.49
USP40-201ENST00000251722 ZNF705DP0CH99 300 aaPredicted RBP12.01□□□□□ -0.49
USP40-201ENST00000251722 ZNF705BP0CI00 300 aaPredicted RBP12.01□□□□□ -0.49
USP40-201ENST00000251722 FKBP2P26885 142 aaKnown RBP12.01□□□□□ -0.49
USP40-201ENST00000251722 MRPS10P82664 201 aaKnown RBP12.01□□□□□ -0.49
USP40-201ENST00000251722 ZNF252P-AS1Q0IIN9 211 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 CHRFAM7AQ494W8 412 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 OR4D10Q8NGI6 311 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 CREB3L4Q8TEY5 395 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 FAM46BQ96A09 425 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 TAS2R10Q9NYW0 307 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 SARDHQ9UL12 918 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 ASB4Q9Y574 426 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 AGAP5A6NIR3 686 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 AP1G1O43747 822 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 SLC22A5O76082 557 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 C1orf105O95561 183 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 TMEM240Q5SV17 173 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 C19orf47Q8N9M1 422 aaKnown RBP12.01□□□□□ -0.49
USP40-201ENST00000251722 SEMA6DQ8NFY4 1073 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 SLC5A7Q9GZV3 580 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 C1GALT1Q9NS00 363 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 FADS1O60427 444 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 SNNO75324 88 aaPredicted RBP12.01□□□□□ -0.49
USP40-201ENST00000251722 TLE3Q04726 772 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 BAMBIQ13145 260 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 RSPO2Q6UXX9 243 aaPredicted RBP12.01□□□□□ -0.49
USP40-201ENST00000251722 KRTCAP2Q8N6L1 136 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 TMEM178AQ8NBL3 297 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 TMEM203Q969S6 136 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 NSUN5Q96P11 429 aaKnown RBP12.01□□□□□ -0.49
USP40-201ENST00000251722 UBE2ZQ9H832 354 aaPredicted RBP12.01□□□□□ -0.49
USP40-201ENST00000251722 NT5DC2Q9H857 520 aa12.01□□□□□ -0.49
USP40-201ENST00000251722 CH25HO95992 272 aa12□□□□□ -0.49
USP40-201ENST00000251722 POU3F2P20265 443 aaPredicted RBP12□□□□□ -0.49
USP40-201ENST00000251722 AK4P27144 223 aaPredicted RBP12□□□□□ -0.49
USP40-201ENST00000251722 NR0B1P51843 470 aaKnown RBP12□□□□□ -0.49
USP40-201ENST00000251722 INHBCP55103 352 aa12□□□□□ -0.49
USP40-201ENST00000251722 GPR139Q6DWJ6 353 aa12□□□□□ -0.49
USP40-201ENST00000251722 FAM122BQ7Z309 247 aa12□□□□□ -0.49
USP40-201ENST00000251722 SLC43A2Q8N370 569 aa12□□□□□ -0.49
USP40-201ENST00000251722 ACBD7Q8N6N7 88 aa12□□□□□ -0.49
USP40-201ENST00000251722 OR8S1Q8NH09 359 aa12□□□□□ -0.49
USP40-201ENST00000251722 FCAMRQ8WWV6 532 aa12□□□□□ -0.49
USP40-201ENST00000251722 PAPPA2Q9BXP8 1791 aa12□□□□□ -0.49
USP40-201ENST00000251722 GLI3P10071 1580 aa12□□□□□ -0.49
USP40-201ENST00000251722 SLC9B1P1A6NJY1 282 aa12□□□□□ -0.49
USP40-201ENST00000251722 PAX6P26367 422 aa12□□□□□ -0.49
USP40-201ENST00000251722 IDUAP35475 653 aa12□□□□□ -0.49
USP40-201ENST00000251722 RBMXP38159 391 aaKnown RBP12□□□□□ -0.49
USP40-201ENST00000251722 XCR1P46094 333 aa12□□□□□ -0.49
USP40-201ENST00000251722 PRDX1Q06830 199 aaKnown RBP12□□□□□ -0.49
USP40-201ENST00000251722 ZNF674Q2M3X9 581 aa12□□□□□ -0.49
USP40-201ENST00000251722 SERPINA11Q86U17 422 aa12□□□□□ -0.49
USP40-201ENST00000251722 ACOT4Q8N9L9 421 aa12□□□□□ -0.49
USP40-201ENST00000251722 OR1J2Q8NGS2 313 aa12□□□□□ -0.49
USP40-201ENST00000251722 PRR11Q96HE9 360 aaPredicted RBP12□□□□□ -0.49
USP40-201ENST00000251722 UHRF1Q96T88 793 aaPredicted RBP12□□□□□ -0.49
USP40-201ENST00000251722 BOCQ9BWV1 1114 aa12□□□□□ -0.49
USP40-201ENST00000251722 TOGARAM1Q9Y4F4 1720 aa12□□□□□ -0.49
USP40-201ENST00000251722 LOC102723532A0A0G2JNH3 316 aa12□□□□□ -0.49
USP40-201ENST00000251722 GPR75O95800 540 aa12□□□□□ -0.49
USP40-201ENST00000251722 SLC6A11P48066 632 aa12□□□□□ -0.49
USP40-201ENST00000251722 DCDP81605 110 aaKnown RBP12□□□□□ -0.49
USP40-201ENST00000251722 TANGO2Q6ICL3 276 aa12□□□□□ -0.49
USP40-201ENST00000251722 GATSQ8NAP1 163 aa12□□□□□ -0.49
USP40-201ENST00000251722 OR6Q1Q8NGQ2 317 aa12□□□□□ -0.49
USP40-201ENST00000251722 TBC1D20Q96BZ9 403 aa12□□□□□ -0.49
USP40-201ENST00000251722 PITX2Q99697 317 aa12□□□□□ -0.49
USP40-201ENST00000251722 CCDC86Q9H6F5 360 aaKnown RBP12□□□□□ -0.49
USP40-201ENST00000251722 TAS2R8Q9NYW2 309 aa12□□□□□ -0.49
USP40-201ENST00000251722 TLCD2A6NGC4 264 aa12□□□□□ -0.49
USP40-201ENST00000251722 ARNTLO00327 626 aa12□□□□□ -0.49
USP40-201ENST00000251722 GLSO94925 669 aaPredicted RBP12□□□□□ -0.49
USP40-201ENST00000251722 GRB7Q14451 532 aa12□□□□□ -0.49
USP40-201ENST00000251722 OXA1LQ15070 435 aa12□□□□□ -0.49
USP40-201ENST00000251722 SIX1Q15475 284 aaPredicted RBP12□□□□□ -0.49
USP40-201ENST00000251722 RGNQ15493 299 aa12□□□□□ -0.49
USP40-201ENST00000251722 CLRN3Q8NCR9 226 aa12□□□□□ -0.49
USP40-201ENST00000251722 NRG4Q8WWG1 115 aa12□□□□□ -0.49
USP40-201ENST00000251722 ASB11Q8WXH4 323 aa12□□□□□ -0.49
USP40-201ENST00000251722 ZNF649Q9BS31 505 aa12□□□□□ -0.49
USP40-201ENST00000251722 POTEKPQ9BYX7 375 aa12□□□□□ -0.49
USP40-201ENST00000251722 ENAMQ9NRM1 1142 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 156.1 ms