RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 KCMF1Q9P0J7 381 aa17.39■□□□□ 0.38
CPSF3-201ENST00000238112 TBC1D29Q9UFV1 150 aa17.39■□□□□ 0.38
CPSF3-201ENST00000238112 ZNF223Q9UK11 482 aaPredicted RBP17.39■□□□□ 0.38
CPSF3-201ENST00000238112 INMT-MINDY4F8WBC2 141 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 HRO43593 1189 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 B3GALT2O43825 422 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 CPNE3O75131 537 aaKnown RBP17.39■□□□□ 0.37
CPSF3-201ENST00000238112 RCBTB2O95199 551 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 C1QBP02746 253 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 DBIP07108 87 aaKnown RBP17.39■□□□□ 0.37
CPSF3-201ENST00000238112 GZMKP49863 264 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 FXYD6P3P58550 94 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 RRAS2P62070 204 aaPredicted RBP17.39■□□□□ 0.37
CPSF3-201ENST00000238112 SNRPNP63162 240 aaKnown RBP17.39■□□□□ 0.37
CPSF3-201ENST00000238112 MAPK14Q16539 360 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 MRPL2Q5T653 305 aaKnown RBP17.39■□□□□ 0.37
CPSF3-201ENST00000238112 WDR88Q6ZMY6 472 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 LSRQ86X29 649 aaPredicted RBP17.39■□□□□ 0.37
CPSF3-201ENST00000238112 LNX2Q8N448 690 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 CREB3L1Q96BA8 519 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 OR2M4Q96R27 311 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 NDC1Q9BTX1 674 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 IFT27Q9BW83 186 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 SRMSQ9H3Y6 488 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 PIGUQ9H490 435 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 INPP5EQ9NRR6 644 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 CYSLTR2Q9NS75 346 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 MCUBQ9NWR8 336 aa17.39■□□□□ 0.37
CPSF3-201ENST00000238112 SLC22A31A6NKX4 558 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 PRR23D1E9PI22 279 aaPredicted RBP17.38■□□□□ 0.37
CPSF3-201ENST00000238112 STX11O75558 287 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 REM1O75628 298 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 MT-ND5P03915 603 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 PRR23D2P0DMB1 279 aaPredicted RBP17.38■□□□□ 0.37
CPSF3-201ENST00000238112 LAMP2P13473 410 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 CPMP14384 443 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 NDUFS1P28331 727 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 ATP12AP54707 1039 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 HTRA3P83110 453 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 TRMT12Q53H54 448 aaKnown RBP17.38■□□□□ 0.37
CPSF3-201ENST00000238112 DCST2Q5T1A1 773 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 RPL13AP3Q6NVV1 102 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 SLC22A18Q96BI1 424 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 KCTD12Q96CX2 325 aaKnown RBP17.38■□□□□ 0.37
CPSF3-201ENST00000238112 HCAR1Q9BXC0 346 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 ENKD1Q9H0I2 346 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 C5orf42Q9H799 3197 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 PRSS38A1L453 326 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 SLC31A1O15431 190 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 NID1P14543 1247 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 SHC1P29353 583 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 ID2Q02363 134 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 ENPP2Q13822 863 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 RUNX2Q13950 521 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 IL20RBQ6UXL0 311 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 PLCZ1Q86YW0 608 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 SAMD12Q8N8I0 201 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 SLC37A3Q8NCC5 494 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 RFT1Q96AA3 541 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 TIMP4Q99727 224 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 OR51V1Q9H2C8 321 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 TRPV4Q9HBA0 871 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 ENAMQ9NRM1 1142 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 CMC2Q9NRP2 79 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 CLDND1Q9NY35 253 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 KLF15Q9UIH9 416 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 DAPP1Q9UN19 280 aa17.38■□□□□ 0.37
CPSF3-201ENST00000238112 TBC1D3DA0A087WVF3 549 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 TBC1D3IA0A087WXS9 549 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 TBC1D3EA0A087X179 549 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 URADA6NGE7 173 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 TBC1D3LB9A6J9 549 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 PLRG1O43660 514 aaKnown RBP17.37■□□□□ 0.37
CPSF3-201ENST00000238112 ALX3O95076 343 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 TBC1D3HP0C7X1 549 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 SAGP10523 405 aaPredicted RBP17.37■□□□□ 0.37
CPSF3-201ENST00000238112 TBXA2RP21731 343 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 SEC13P55735 322 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 FOXK2Q01167 660 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 MRPL28Q13084 256 aaKnown RBP17.37■□□□□ 0.37
CPSF3-201ENST00000238112 BICRALQ6AI39 1079 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 TBC1D3CQ6IPX1 549 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 USP53Q70EK8 1073 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 GPALPP1Q8IXQ4 340 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 TBC1D3Q8IZP1 549 aaPredicted RBP17.37■□□□□ 0.37
CPSF3-201ENST00000238112 COX18Q8N8Q8 333 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 DOK4Q8TEW6 326 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 AKAP1Q92667 903 aaKnown RBP eCLIP17.37■□□□□ 0.37
CPSF3-201ENST00000238112 KISS1RQ969F8 398 aaPredicted RBP17.37■□□□□ 0.37
CPSF3-201ENST00000238112 AHCYL2Q96HN2 611 aaKnown RBP17.37■□□□□ 0.37
CPSF3-201ENST00000238112 C19orf53Q9UNZ5 99 aaPredicted RBP17.37■□□□□ 0.37
CPSF3-201ENST00000238112 SCN3AQ9NY46 2000 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 EML2O95834 649 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 MRPL3P09001 348 aaKnown RBP17.37■□□□□ 0.37
CPSF3-201ENST00000238112 MYOGP15173 224 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 CD53P19397 219 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 RBMS1P29558 406 aaKnown RBP17.37■□□□□ 0.37
CPSF3-201ENST00000238112 ACSL1P33121 698 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 BMP8BP34820 402 aa17.37■□□□□ 0.37
CPSF3-201ENST00000238112 RAB25P57735 213 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms