RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 RP2O75695 350 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 ANXA7P20073 488 aaKnown RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CD27P26842 260 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 PKLRP30613 574 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 GABREP78334 506 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 HABP2Q14520 560 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 PRR22Q8IZ63 422 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 OR51G2Q8NGK0 314 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 OR51A7Q8NH64 312 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 OR5AK2Q8NH90 309 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 WDR20Q8TBZ3 569 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SCAMP4Q969E2 229 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 TMEM203Q969S6 136 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 ELSPBP1Q96BH3 223 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 RTP4Q96DX8 246 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 RGCCQ9H4X1 137 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 HSFX1Q9UBD0 423 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 GNG12Q9UBI6 72 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 DOCK2Q92608 1830 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 TDRD15B5MCY1 1934 aaKnown RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 PPP1R11O60927 126 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 TK1P04183 234 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SRFP11831 508 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 AZGP1P25311 298 aaKnown RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 PAX6P26367 422 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SNCAP37840 140 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 MADCAM1Q13477 382 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 WSCD2Q2TBF2 565 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 GSG1LQ6UXU4 331 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 C2CD4AQ8NCU7 369 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 OR4K1Q8NGD4 311 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 HUS1BQ8NHY5 278 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 RAB8BQ92930 207 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 MAL2Q969L2 176 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF382Q96SR6 550 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 FUCA2Q9BTY2 467 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 P2RY12Q9H244 342 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 HCFC1R1Q9NWW0 138 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CA5BQ9Y2D0 317 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SSUH2Q9Y2M2 353 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CMAHPQ9Y471 501 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 ZCWPW2A0A1B0GU75 182 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 LOC100130705A0A1B0GUX0 176 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SOBPA7XYQ1 873 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 GPR171O14626 319 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CREG1O75629 220 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 GDF5P43026 501 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF136P52737 540 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 HTD2P86397 168 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 C17orf67Q0P5P2 114 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CATR1Q13166 79 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 IL17AQ16552 155 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 KCTD21Q4G0X4 260 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 WBP2NLQ6ICG8 309 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 TMEM184AQ6ZMB5 413 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CAMKMTQ7Z624 323 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CSNK2A3Q8NEV1 391 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 STEAP2Q8NFT2 490 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 FNDC8Q8TC99 324 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 DCUN1D4Q92564 292 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 HRASLS5Q96KN8 279 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SMOQ99835 787 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 WDR83Q9BRX9 315 aaKnown RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SSU72Q9NP77 194 aaKnown RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 RNF24Q9Y225 148 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 IGLV3-22A0A075B6J6 115 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 FANCGO15287 622 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SOX14O95416 240 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 GLULP15104 373 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 RGS6P49758 472 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 RNF144AP50876 292 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 HOXA4Q00056 320 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 DEFA5Q01523 94 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 FAM78AQ5JUQ0 283 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 TUBA3EQ6PEY2 450 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 APCDD1Q8J025 514 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 RAB2BQ8WUD1 216 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 PIP5K1AQ99755 562 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 MFRPQ9BY79 579 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 L2HGDHQ9H9P8 463 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 HCFC2Q9Y5Z7 792 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 TRAPPC13A5PLN9 417 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 TLCD2A6NGC4 264 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF732B4DXR9 585 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 C9JVG2 144 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SPINT2O43291 252 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 ZIC2O95409 532 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 MT-ND1P03886 318 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 NDUFB7P17568 137 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 PTNP21246 168 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 FXYD4P59646 89 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 FGFBP1Q14512 234 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 PDLIM3Q53GG5 364 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 C6orf52Q5T4I8 152 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 MOB3CQ70IA8 216 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 DPPA4Q7L190 304 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CMTM2Q8TAZ6 248 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CPPED1Q9BRF8 314 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 C16orf70Q9BSU1 422 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 ESRP2Q9H6T0 727 aaKnown RBP5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms