RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 BTNL3Q6UXE8 466 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 DNM1P46Q6ZS02 220 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 CALHM3Q86XJ0 350 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 UNC45BQ8IWX7 931 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 CCDC170Q8IYT3 715 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 C10orf53Q8N6V4 93 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 LRRC17Q8N6Y2 441 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 OR9A1PQ8NGU1 263 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 WDR36Q8NI36 951 aaKnown RBP1.29□□□□□ -2.2
SCN1A-208ENST00000625916 ART4Q93070 314 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 CCDC51Q96ER9 411 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 TMEM80Q96HE8 168 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 ZNF560Q96MR9 790 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 NAP1L3Q99457 506 aaPredicted RBP1.29□□□□□ -2.2
SCN1A-208ENST00000625916 CDX2Q99626 313 aaPredicted RBP1.29□□□□□ -2.2
SCN1A-208ENST00000625916 RIOK1Q9BRS2 568 aaKnown RBP1.29□□□□□ -2.2
SCN1A-208ENST00000625916 DESI2Q9BSY9 194 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 TEX13AQ9BXU3 409 aaPredicted RBP1.29□□□□□ -2.2
SCN1A-208ENST00000625916 FANCFQ9NPI8 374 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 GHRLQ9UBU3 117 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 EXOSC1Q9Y3B2 195 aaKnown RBP1.29□□□□□ -2.2
SCN1A-208ENST00000625916 DYNC1LI1Q9Y6G9 523 aaKnown RBP1.29□□□□□ -2.2
SCN1A-208ENST00000625916 ITGB4P16144 1822 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 A0A1W2PRQ8 180 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 TM9SF1O15321 606 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 RBBP9O75884 186 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 SLC25A27O95847 323 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 C6orf47O95873 294 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 JCHAINP01591 159 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 ADRB3P13945 408 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 MUTP22033 750 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 GCKP35557 465 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 CASP3P42574 277 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 SLC6A8P48029 635 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 NUMBP49757 651 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 GPC3P51654 580 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 HNRNPFP52597 415 aaKnown RBP1.28□□□□□ -2.2
SCN1A-208ENST00000625916 MRPS11P82912 194 aaKnown RBP1.28□□□□□ -2.2
SCN1A-208ENST00000625916 MRPS6P82932 125 aaKnown RBP1.28□□□□□ -2.2
SCN1A-208ENST00000625916 GFPT1Q06210 699 aaPredicted RBP1.28□□□□□ -2.2
SCN1A-208ENST00000625916 ZP4Q12836 540 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 AANATQ16613 207 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 ZNF674Q2M3X9 581 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 HFEQ30201 348 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 CFAP221Q4G0U5 840 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 LEG1Q6P5S2 330 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 DLEU7Q6UYE1 221 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 NET1Q7Z628 596 aaPredicted RBP1.28□□□□□ -2.2
SCN1A-208ENST00000625916 CCDC91Q7Z6B0 441 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 IFNEQ86WN2 208 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 TTC5Q8N0Z6 440 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 BPIFB2Q8N4F0 458 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 ZNF709Q8N972 641 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 NEK11Q8NG66 645 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 OR51G1Q8NGK1 321 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 OR2A12Q8NGT7 310 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 ATP6V1E2Q96A05 226 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 DTD2Q96FN9 168 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 EEF2KMTQ96G04 330 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 ELMO2Q96JJ3 720 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 FAM210BQ96KR6 192 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 DDX47Q9H0S4 455 aaKnown RBP1.28□□□□□ -2.2
SCN1A-208ENST00000625916 GDAP2Q9NXN4 497 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 OR1A1Q9P1Q5 309 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 SPRR3Q9UBC9 169 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 BCAP29Q9UHQ4 241 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 CLCA3PQ9Y6N3 262 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 ZMYM6O95789 1325 aa1.28□□□□□ -2.2
SCN1A-208ENST00000625916 METP08581 1390 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 A0A0U1RRA0 63 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 TTC26A0AVF1 554 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 TMEM89A2RUT3 159 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 PSMB11A5LHX3 300 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 FBLL1A6NHQ2 334 aaKnown RBP1.27□□□□□ -2.21
SCN1A-208ENST00000625916 SAGE2PA6NJ88 616 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 A8MUA0 341 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 K7ENP7 123 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 PES1O00541 588 aaKnown RBP1.27□□□□□ -2.21
SCN1A-208ENST00000625916 ZNF264O43296 627 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 FMO6PO60774 539 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 TRIM3O75382 744 aaPredicted RBP1.27□□□□□ -2.21
SCN1A-208ENST00000625916 CXCL14O95715 111 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 HMOX1P09601 288 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 RNASE2P10153 161 aaKnown RBP1.27□□□□□ -2.21
SCN1A-208ENST00000625916 IGLL1P15814 213 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 HPDP32754 393 aaPredicted RBP1.27□□□□□ -2.21
SCN1A-208ENST00000625916 BTDP43251 543 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 GNPDA1P46926 289 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 MNAT1P51948 309 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 RND3P61587 244 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 KRT83P78385 493 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 ARF5P84085 180 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 VLDLRP98155 873 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 ZNF154Q13106 437 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 LRIT3Q3SXY7 679 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 CHRFAM7AQ494W8 412 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 AGKQ53H12 422 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 ARSKQ6UWY0 536 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 OLFM4Q6UX06 510 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 ZNF562Q6V9R5 426 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms