RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 IFNGR2P38484 337 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 MTNR1AP48039 350 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 LIMK1P53667 647 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 TUBA1BP68363 451 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 PSG6Q00889 435 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 ZNF267Q14586 743 aaPredicted RBP9.85□□□□□ -0.83
CUX1-221ENST00000622516 LRIT3Q3SXY7 679 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 RASSF6Q6ZTQ3 369 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 MBOAT2Q6ZWT7 520 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 TUBA1AQ71U36 451 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 KBTBD8Q8NFY9 601 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 OR9Q1Q8NGQ5 310 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 OR51A7Q8NH64 312 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 FGF11Q92914 225 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 MMABQ96EY8 250 aaPredicted RBP9.85□□□□□ -0.83
CUX1-221ENST00000622516 ART5Q96L15 291 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 ASPNQ9BXN1 380 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 RACGAP1Q9H0H5 632 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 INIPQ9NRY2 104 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 UCKL1Q9NWZ5 548 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 SOHLH2Q9NX45 425 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 KLK4Q9Y5K2 254 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 CDHR4A6H8M9 788 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 SOCS6O14544 535 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 RGS5O15539 181 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 FOXS1O43638 330 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 KCNK2O95069 426 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 RAB36O95755 333 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 IFI30P13284 250 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 NID1P14543 1247 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 UGT2B10P36537 528 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 ATP6V1E1P36543 226 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 CRYBB2P43320 205 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 GCGRP47871 477 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 EMDP50402 254 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 BLKP51451 505 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 GAS1P54826 345 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 CDH11P55287 796 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 RHAGQ02094 409 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 FAM53BQ14153 422 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 INSL4Q14641 139 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 DECR1Q16698 335 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 SNAP47Q5SQN1 464 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 MEDAGQ5VYS4 303 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 PHC2Q8IXK0 858 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 LINC00471Q8N535 108 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 RIT1Q92963 219 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 SLC38A2Q96QD8 506 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 TBX5Q99593 518 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 NUAK2Q9H093 628 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 MMP27Q9H306 513 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 TRIM45Q9H8W5 580 aaPredicted RBP9.85□□□□□ -0.83
CUX1-221ENST00000622516 TRAV27A0A087WT01 109 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 IGHV5-51A0A0C4DH38 117 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 C10orf142B7Z368 130 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 PRODHO43272 600 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 RFPL3O75679 317 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 AGR2O95994 175 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 LALBAP00709 142 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 ZGLP1P0C6A0 271 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 CLEC2LP0C7M8 214 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 MSL3P1P0C860 447 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 SRFP11831 508 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 MYL12AP19105 171 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 PSMA1P25786 263 aaKnown RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 CSNK1EP49674 416 aaKnown RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 POU6F2P78424 691 aaPredicted RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 TDGQ13569 410 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 CARTPTQ16568 116 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 C22orf42Q6IC83 251 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 SLC36A4Q6YBV0 504 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 ZNF620Q6ZNG0 422 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 RANBP3LQ86VV4 465 aaPredicted RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 SLC22A16Q86VW1 577 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 CPOQ8IVL8 374 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 SYT14Q8NB59 555 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 PROKR2Q8NFJ6 384 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 GIMAP1Q8WWP7 306 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 LMF1Q96S06 567 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 BARHL1Q9BZE3 327 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 SPRTNQ9H040 489 aaPredicted RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 MARCH7Q9H992 704 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 PALMDQ9NP74 551 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 STK25O00506 426 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 SURF4O15260 269 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 OR5F1O95221 314 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 IGLV3-19P01714 112 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 DBIP07108 87 aaKnown RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 SAGP10523 405 aaPredicted RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 FPR3P25089 353 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 CD38P28907 300 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 CD40LGP29965 261 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 S100A5P33763 92 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 SLC16A1P53985 500 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 RAB38P57729 211 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 FXYD6P3P58550 94 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 ZNF791Q3KP31 576 aaPredicted RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 PLBD1Q6P4A8 553 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 C19orf48Q6RUI8 117 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 134.6 ms