RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 RABL3Q5HYI8 236 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 TBCELQ5QJ74 424 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 COMTD1Q86VU5 262 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 SLC38A5Q8WUX1 472 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 RMND5AQ9H871 391 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 RLIMQ9NVW2 624 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 TRIM33Q9UPN9 1127 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 L3MBTL1Q9Y468 752 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 CHST2Q9Y4C5 530 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 CLEC18AA5D8T8 446 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 NDUFB5O43674 189 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 ZCCHC18P0CG32 403 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 ABOP16442 354 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 PTGS2P35354 604 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 KHKP50053 298 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 ADRM1Q16186 407 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 GXYLT1Q4G148 440 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 KRTCAP3Q53RY4 240 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 METTL21CQ5VZV1 264 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 RTL6Q6ICC9 239 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 BHLHB9Q6PI77 547 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 CLEC18BQ6UXF7 455 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 MSANTD1Q6ZTZ1 278 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 DHDDSQ86SQ9 333 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 CLEC18CQ8NCF0 446 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 NEIL3Q8TAT5 605 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 PHOSPHO1Q8TCT1 267 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 EXO5Q9H790 373 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 UBQLN4Q9NRR5 601 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 ALKBH4Q9NXW9 302 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 NDUFAF1Q9Y375 327 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 WDR45Q9Y484 360 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 FAM215AQ9Y5M1 114 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 VPS13CQ709C8 3753 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 C15orf38-AP3S2A0A0A6YYH1 394 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 KIAA0513O60268 411 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 SNRPB2P08579 225 aaKnown RBP12.23□□□□□ -0.45
LINC00540-202ENST00000616974 TFPTP0C1Z6 253 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 BMP7P18075 431 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 DPP4P27487 766 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 PSMD4P55036 377 aaKnown RBP12.23□□□□□ -0.45
LINC00540-202ENST00000616974 CLDN15P56746 228 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 CRYZQ08257 329 aaKnown RBP12.23□□□□□ -0.45
LINC00540-202ENST00000616974 ARHGAP11AQ6P4F7 1023 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 TRIML2Q8N7C3 387 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 TMEM19Q96HH6 336 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 TIMP4Q99727 224 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 CPPED1Q9BRF8 314 aaPredicted RBP12.23□□□□□ -0.45
LINC00540-202ENST00000616974 G6PC3Q9BUM1 346 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 CCDC106Q9BWC9 280 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 UGT2B28Q9BY64 529 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 TAS2R10Q9NYW0 307 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 ABCG2Q9UNQ0 655 aa12.23□□□□□ -0.45
LINC00540-202ENST00000616974 CBR3O75828 277 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 UBTFL6P0CB48 400 aaPredicted RBP12.22□□□□□ -0.45
LINC00540-202ENST00000616974 ATP6V1C1P21283 382 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 CA7P43166 264 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 ATP12AP54707 1039 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 GFRA1P56159 465 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 ADORA2A-AS1P86434 159 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 REP15Q6BDI9 236 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 VRK2Q86Y07 508 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 OR4K17Q8NGC6 315 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 OR14L1PQ8NHC6 308 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 FBXO27Q8NI29 283 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 RCN3Q96D15 328 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 CCDC120Q96HB5 630 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 WFDC6Q9BQY6 131 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 ACKR4Q9NPB9 350 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.22□□□□□ -0.45
LINC00540-202ENST00000616974 HCFC1P51610 2035 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 ROS1P08922 2347 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 A0A1B0GVC2 190 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 TTC36A6NLP5 189 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 CCL21O00585 134 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 SCDO00767 359 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 ANGPT2O15123 496 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 HCRTR2O43614 444 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 EFNA2O43921 213 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 STX11O75558 287 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 CYP7B1O75881 506 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 LDLRP01130 860 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 ELAVL4P26378 380 aaKnown RBP12.22□□□□□ -0.45
LINC00540-202ENST00000616974 AQP1P29972 269 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 DSTNP60981 165 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 RPP38P78345 283 aaKnown RBP12.22□□□□□ -0.45
LINC00540-202ENST00000616974 SRYQ05066 204 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 RUNDC3AQ59EK9 446 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 ZNF585AQ6P3V2 769 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 Q6ZPB1 254 aaPredicted RBP12.22□□□□□ -0.45
LINC00540-202ENST00000616974 SEM1Q6ZVN7 128 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 CPLX4Q7Z7G2 160 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 DPP10Q8N608 796 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 FAM57AQ8TBR7 257 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 C1GALT1C1Q96EU7 318 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 DNAJA3Q96EY1 480 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 CGREF1Q99674 301 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 MYLK2Q9H1R3 596 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 TMEM185BQ9H7F4 350 aa12.22□□□□□ -0.45
LINC00540-202ENST00000616974 LEF1Q9UJU2 399 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms