RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 MTHFD2LQ9H903 347 aaPredicted RBP8.66□□□□□ -1.02
TRIM28-208ENST00000597172 MCCC2Q9HCC0 563 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 ATP13A2Q9NQ11 1180 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 DCAF13Q9NV06 445 aaKnown RBP8.66□□□□□ -1.02
TRIM28-208ENST00000597172 FLRT3Q9NZU0 649 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 MAGEL2Q9UJ55 1249 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 ANGPT4Q9Y264 503 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 OR10H1Q9Y4A9 318 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 PCDHGB6Q9Y5F9 930 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 NPFFR2Q9Y5X5 522 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 GPC6Q9Y625 555 aaPredicted RBP8.66□□□□□ -1.02
TRIM28-208ENST00000597172 NPIPA5A0A0B4J1W7 369 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 CENPVL1A0A0U1RR11 272 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 TCRBV3S1A0A5B6 114 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 TMEM247A6NEH6 219 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 ARGFXA6NJG6 315 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 NPIPA7E9PJI5 369 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 KIAA0513O60268 411 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 TPST1O60507 370 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 REM1O75628 298 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 UGT2B17O75795 530 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 CIB2O75838 187 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 SERPINA1P01009 418 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 OPN1SWP03999 348 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 NPIPA8P0DM63 369 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 ETS2P15036 469 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 FOSL1P15407 271 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 RPS4Y1P22090 263 aaKnown RBP8.65□□□□□ -1.02
TRIM28-208ENST00000597172 RFX3P48380 749 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 ERFP50548 548 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 PNLIPRP2P54317 469 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 ACTR3P61158 418 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 ELF3P78545 371 aaPredicted RBP8.65□□□□□ -1.02
TRIM28-208ENST00000597172 FLOT2Q14254 428 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 GNA13Q14344 377 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 GPR68Q15743 365 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 DECR1Q16698 335 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 DUSP7Q16829 419 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.65□□□□□ -1.02
TRIM28-208ENST00000597172 INTS11Q5TA45 600 aaKnown RBP8.65□□□□□ -1.02
TRIM28-208ENST00000597172 CBLL1Q75N03 491 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 PATL1Q86TB9 770 aaKnown RBP8.65□□□□□ -1.02
TRIM28-208ENST00000597172 TAGAPQ8N103 731 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 ZNF619Q8N2I2 560 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 SLC15A4Q8N697 577 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 SIRT6Q8N6T7 355 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 FAM86B1Q8N7N1 296 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 TMEM102Q8N9M5 508 aaPredicted RBP8.65□□□□□ -1.02
TRIM28-208ENST00000597172 BHLHE22Q8NFJ8 381 aaPredicted RBP8.65□□□□□ -1.02
TRIM28-208ENST00000597172 OR10Q1Q8NGQ4 319 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 OR4C3Q8NH37 302 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 BBS10Q8TAM1 723 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 ITLN2Q8WWU7 325 aaPredicted RBP8.65□□□□□ -1.02
TRIM28-208ENST00000597172 DIO2Q92813 273 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 FAM162AQ96A26 154 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 EFHD2Q96C19 240 aaPredicted RBP8.65□□□□□ -1.02
TRIM28-208ENST00000597172 OMA1Q96E52 524 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 C14orf79Q96F83 325 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 RASL10BQ96S79 203 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 ADOQ96SZ5 270 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 G6PC3Q9BUM1 346 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 ZBTB20Q9HC78 741 aaPredicted RBP8.65□□□□□ -1.02
TRIM28-208ENST00000597172 POLE3Q9NRF9 147 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 AGPAT4Q9NRZ5 378 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 OLAHQ9NV23 265 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 CALML5Q9NZT1 146 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 YARS2Q9Y2Z4 477 aaKnown RBP8.65□□□□□ -1.02
TRIM28-208ENST00000597172 WDR45Q9Y484 360 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 CHST2Q9Y4C5 530 aa8.65□□□□□ -1.02
TRIM28-208ENST00000597172 PRAMEF25A6NGN4 478 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 OR6C70A6NIJ9 312 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 AGAP5A6NIR3 686 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 AQP12BA6NM10 295 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 ADAM10O14672 748 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 UGT2B11O75310 529 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 ENTPD5O75356 428 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 GMNNO75496 209 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 ITGA10O75578 1167 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 PPM1BO75688 479 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 CEACAM4O75871 244 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 PRKD3O94806 890 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 EPPINO95925 133 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 ALPPP05187 535 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 FBXO45P0C2W1 286 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 CYP4B1P13584 511 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 NAGAP17050 411 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 CD247P20963 164 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 TBXA2RP21731 343 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 SOX3P41225 446 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 KCNJ5P48544 419 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 NRG3P56975 720 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 FBXW4P57775 412 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 SELENOWP63302 87 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 PSPHP78330 225 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 TLE4Q04727 773 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 PLCXD2Q0VAA5 305 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 ZNF141Q15928 474 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 ZNF791Q3KP31 576 aaPredicted RBP8.64□□□□□ -1.03
TRIM28-208ENST00000597172 GRAMD1BQ3KR37 738 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 GLIPR1L2Q4G1C9 344 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms