RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 RPS26P11Q5JNZ5 115 aaPredicted RBP9.38□□□□□ -0.91
SS18-210ENST00000578700 C6orf52Q5T4I8 152 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 RPUSD3Q6P087 351 aaKnown RBP9.38□□□□□ -0.91
SS18-210ENST00000578700 SHQ1Q6PI26 577 aaKnown RBP9.38□□□□□ -0.91
SS18-210ENST00000578700 TAGAPQ8N103 731 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 ZNF808Q8N4W9 903 aaPredicted RBP9.38□□□□□ -0.91
SS18-210ENST00000578700 SIRT6Q8N6T7 355 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 SMYD1Q8NB12 490 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 OR11G2Q8NGC1 345 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 CYGBQ8WWM9 190 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 NR4A3Q92570 626 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 PMM1Q92871 262 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 ANKRD9Q96BM1 317 aaPredicted RBP9.38□□□□□ -0.91
SS18-210ENST00000578700 C8orf44Q96CB5 159 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 C16orf58Q96GQ5 468 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 ZNF354BQ96LW1 612 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 TAAR6Q96RI8 345 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 LMF1Q96S06 567 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 EPYCQ99645 322 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 PIP5K1AQ99755 562 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 CRB3Q9BUF7 120 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 ADI1Q9BV57 179 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 PIGUQ9H490 435 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 NTN4Q9HB63 628 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 CTSFQ9UBX1 484 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 C3orf18Q9UK00 162 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 TMCC3Q9ULS5 477 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 IFT52Q9Y366 437 aa9.38□□□□□ -0.91
SS18-210ENST00000578700 GPC6Q9Y625 555 aaPredicted RBP9.38□□□□□ -0.91
SS18-210ENST00000578700 A0A1W2PS29 197 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 H0YAE9 185 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 TNFRSF11BO00300 401 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 PCDH17O14917 1159 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 ACOX3O15254 700 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 HS6ST1O60243 411 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 PRAMEF2O60811 474 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 GCM2O75603 506 aaPredicted RBP9.37□□□□□ -0.91
SS18-210ENST00000578700 CDC123O75794 336 aaPredicted RBP9.37□□□□□ -0.91
SS18-210ENST00000578700 MFN2O95140 757 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 H6PDO95479 791 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 FESP07332 822 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 THRBP10828 461 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 RHCEP18577 417 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 RRM2P31350 389 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 KCNJ5P48544 419 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 TDGF1P3P51864 188 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 CHN2P52757 468 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 SNRPNP63162 240 aaKnown RBP9.37□□□□□ -0.91
SS18-210ENST00000578700 SPIBQ01892 262 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 MERTKQ12866 999 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 LARS2Q15031 903 aaKnown RBP9.37□□□□□ -0.91
SS18-210ENST00000578700 PRICKLE4Q2TBC4 344 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 MINDY4Q4G0A6 757 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 TRMT12Q53H54 448 aaKnown RBP9.37□□□□□ -0.91
SS18-210ENST00000578700 ZNF311Q5JNZ3 666 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 TTC23Q5W5X9 447 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 ZNF324BQ6AW86 544 aaPredicted RBP9.37□□□□□ -0.91
SS18-210ENST00000578700 FAAH2Q6GMR7 532 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 FAM111BQ6SJ93 734 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 COX15Q7KZN9 410 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 EPHX4Q8IUS5 362 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 PEX5LQ8IYB4 626 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 MARVELD2Q8N4S9 558 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 ATG16L2Q8NAA4 619 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 TMEM52Q8NDY8 209 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 PIK3C3Q8NEB9 887 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 BRIX1Q8TDN6 353 aaKnown RBP9.37□□□□□ -0.91
SS18-210ENST00000578700 GPR151Q8TDV0 419 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 PHF10Q8WUB8 498 aaKnown RBP9.37□□□□□ -0.91
SS18-210ENST00000578700 NACC2Q96BF6 587 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 ART5Q96L15 291 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 PTCHD1Q96NR3 888 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 ZNF300Q96RE9 604 aaPredicted RBP9.37□□□□□ -0.91
SS18-210ENST00000578700 STACQ99469 402 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 SPSB2Q99619 263 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 SERHL2Q9H4I8 314 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 MTHFD2LQ9H903 347 aaPredicted RBP9.37□□□□□ -0.91
SS18-210ENST00000578700 ZNF556Q9HAH1 456 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 CXorf21Q9HAI6 301 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 MKKSQ9NPJ1 570 aaPredicted RBP9.37□□□□□ -0.91
SS18-210ENST00000578700 POLE3Q9NRF9 147 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 DUSP22Q9NRW4 184 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 USE1Q9NZ43 259 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 MAT2BQ9NZL9 334 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 ENOPH1Q9UHY7 261 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 ABCG2Q9UNQ0 655 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 CFL2Q9Y281 166 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 ENPP4Q9Y6X5 453 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 U3KQV3 271 aa9.37□□□□□ -0.91
SS18-210ENST00000578700 HEATR5BQ9P2D3 2071 aa9.36□□□□□ -0.91
SS18-210ENST00000578700 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.36□□□□□ -0.91
SS18-210ENST00000578700 NSG1A0A0A6YYJ2 146 aa9.36□□□□□ -0.91
SS18-210ENST00000578700 TRAV17A0A0B4J275 112 aa9.36□□□□□ -0.91
SS18-210ENST00000578700 MYOCOSA0A1B0GUC4 107 aa9.36□□□□□ -0.91
SS18-210ENST00000578700 A8MVJ9 347 aa9.36□□□□□ -0.91
SS18-210ENST00000578700 STX11O75558 287 aa9.36□□□□□ -0.91
SS18-210ENST00000578700 TNFAIP8O95379 198 aa9.36□□□□□ -0.91
SS18-210ENST00000578700 HPP00738 406 aa9.36□□□□□ -0.91
SS18-210ENST00000578700 ALPLP05186 524 aa9.36□□□□□ -0.91
SS18-210ENST00000578700 MAOAP21397 527 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms