RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 EDARQ9UNE0 448 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 ABCG2Q9UNQ0 655 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 POLR3HQ9Y535 204 aaPredicted RBP6.04□□□□□ -1.44
VPS53-213ENST00000572334 PTGDR2Q9Y5Y4 395 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 SMIM31A0A1B0GVY4 71 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 EMC8O43402 210 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 KLF4O43474 513 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 PROCP04070 461 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 HEXAP06865 529 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 IFI6P09912 130 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 CD8BP10966 210 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 PYGBP11216 843 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 POU2F1P14859 743 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 TAC1P20366 129 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 DRD4P21917 467 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 PRPH2P23942 346 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 MPIP34949 423 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 VHLP40337 213 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 FRKP42685 505 aaPredicted RBP6.03□□□□□ -1.44
VPS53-213ENST00000572334 NCBP2P52298 156 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS53-213ENST00000572334 DIO3P55073 304 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 EEF1A1P68104 462 aaKnown RBP6.03□□□□□ -1.44
VPS53-213ENST00000572334 SIRPAP78324 504 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 PSPHP78330 225 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 PRR5P85299 388 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 OCRLQ01968 901 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 ZNF155Q12901 538 aaPredicted RBP6.03□□□□□ -1.44
VPS53-213ENST00000572334 STX5Q13190 355 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 CAPRIN1Q14444 709 aaKnown RBP6.03□□□□□ -1.44
VPS53-213ENST00000572334 GANABQ14697 944 aaKnown RBP6.03□□□□□ -1.44
VPS53-213ENST00000572334 ADRM1Q16186 407 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 ACKR1Q16570 336 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 GRAMD1BQ3KR37 738 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 KRT71Q3SY84 523 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 Q5PR19 223 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 EEF1A1P5Q5VTE0 462 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 OR2A2Q6IF42 318 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 CLEC9AQ6UXN8 241 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 RINLQ6ZS11 566 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 Q6ZSR9 355 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 ZNF551Q7Z340 670 aaPredicted RBP6.03□□□□□ -1.44
VPS53-213ENST00000572334 PIGWQ7Z7B1 504 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 ZAR1Q86SH2 424 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 EXOC3L1Q86VI1 746 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 SLC22A9Q8IVM8 553 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 SAMD14Q8IZD0 417 aaPredicted RBP6.03□□□□□ -1.44
VPS53-213ENST00000572334 CNEP1R1Q8N9A8 125 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 OR4K17Q8NGC6 315 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 POC1BQ8TC44 478 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 FAM110BQ8TC76 370 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 PIK3R3Q92569 461 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 PIK3IP1Q96FE7 263 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 BBS4Q96RK4 519 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 PINK1Q9BXM7 581 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 SHCBP1LQ9BZQ2 653 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 ROPN1BQ9BZX4 212 aaPredicted RBP6.03□□□□□ -1.44
VPS53-213ENST00000572334 C12orf65Q9H3J6 166 aaKnown RBP6.03□□□□□ -1.44
VPS53-213ENST00000572334 ROPN1Q9HAT0 212 aaPredicted RBP6.03□□□□□ -1.44
VPS53-213ENST00000572334 RNPEPL1Q9HAU8 725 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 MID1IP1Q9NPA3 183 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 TBCCD1Q9NVR7 557 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 FBXO34Q9NWN3 711 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 FAM120CQ9NX05 1096 aaKnown RBP6.03□□□□□ -1.44
VPS53-213ENST00000572334 NTMQ9P121 344 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 NDRG3Q9UGV2 375 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 GRID1Q9ULK0 1009 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 ZNF175Q9Y473 711 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 OR10H1Q9Y4A9 318 aa6.03□□□□□ -1.44
VPS53-213ENST00000572334 FBN1P35555 2871 aaKnown RBP6.03□□□□□ -1.44
VPS53-213ENST00000572334 TRIM64A6NGJ6 449 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 TRIM64BA6NI03 449 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 KIAA1324LA8MWY0 1029 aaPredicted RBP6.02□□□□□ -1.45
VPS53-213ENST00000572334 ALG1L2C9J202 215 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 H3BML4 177 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 H7C1Q1 480 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 RGS16O15492 202 aaPredicted RBP6.02□□□□□ -1.45
VPS53-213ENST00000572334 SEC14L5O43304 696 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 EFNA2O43921 213 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 RSL1D1O76021 490 aaKnown RBP6.02□□□□□ -1.45
VPS53-213ENST00000572334 SLITRK5O94991 958 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 NKX2-2O95096 273 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 UTS2O95399 124 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 ANGPTL1O95841 491 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 PLAUP00749 431 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 LINGO3P0C6S8 592 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 ACP2P11117 423 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 IL11P20809 199 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 KRT20P35900 424 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 GSTM5P46439 218 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 SEC24CP53992 1094 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 MRPS22P82650 360 aaKnown RBP6.02□□□□□ -1.45
VPS53-213ENST00000572334 KRTAP1-1Q07627 177 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 SLC29A2Q14542 456 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 PON3Q15166 354 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 DECR1Q16698 335 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 GLYR1Q49A26 553 aaPredicted RBP6.02□□□□□ -1.45
VPS53-213ENST00000572334 RAET1LQ5VY80 246 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 ANKRD34AQ69YU3 496 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 ANKRD26P1Q6NSI1 321 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 NOXRED1Q6NXP6 359 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms