RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 GABRG3Q99928 467 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 DDX28Q9NUL7 540 aaKnown RBP21.18■□□□□ 0.98
VPS53-211ENST00000571805 FBXO34Q9NWN3 711 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 SIDT1Q9NXL6 827 aaKnown RBP21.18■□□□□ 0.98
VPS53-211ENST00000571805 C2orf92A0A1B0GVN3 265 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 H0Y8X5 98 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 GKN3PP0CG01 181 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 TCEA1P23193 301 aaKnown RBP21.17■□□□□ 0.98
VPS53-211ENST00000571805 TLX1P31314 330 aaPredicted RBP21.17■□□□□ 0.98
VPS53-211ENST00000571805 ID2Q02363 134 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 ZFP69Q49AA0 526 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 CCDC92Q53HC0 331 aaPredicted RBP21.17■□□□□ 0.98
VPS53-211ENST00000571805 LCN1P1Q5VSP4 162 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 UBE2J2Q8N2K1 259 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 TSACCQ96A04 125 aaPredicted RBP21.17■□□□□ 0.98
VPS53-211ENST00000571805 ELSPBP1Q96BH3 223 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 RNF121Q9H920 327 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 PRDM9Q9NQV7 894 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 C20orf141Q9NUB4 165 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 DZANK1Q9NVP4 752 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 PILRAQ9UKJ1 303 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 A0A1W2PQF6 199 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 BHLHE40O14503 412 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 DVL2O14641 736 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 HCN1O60741 890 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 UGT2B7P16662 529 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 TBXA2RP21731 343 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 GALP22466 123 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 MYL9P24844 172 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 NDUFA5Q16718 116 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 PRRT3Q5FWE3 981 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 NIPAL3Q6P499 406 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 GID4Q8IVV7 300 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 ZNF619Q8N2I2 560 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 Q8N402 240 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 PFN4Q8NHR9 129 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 SLC7A6Q92536 515 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 OTULINQ96BN8 352 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 MTIF3Q9H2K0 278 aaKnown RBP21.17■□□□□ 0.98
VPS53-211ENST00000571805 MED20Q9H944 212 aa21.17■□□□□ 0.98
VPS53-211ENST00000571805 LOC105369274A0A096LPK9 316 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 LOC102723532A0A0G2JNH3 316 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 DBIP07108 87 aaKnown RBP21.16■□□□□ 0.98
VPS53-211ENST00000571805 RNF144AP50876 292 aaPredicted RBP21.16■□□□□ 0.98
VPS53-211ENST00000571805 NFATC4Q14934 902 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 OR1Q1Q15612 314 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 DCST2Q5T1A1 773 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 MRPL2Q5T653 305 aaKnown RBP21.16■□□□□ 0.98
VPS53-211ENST00000571805 MEPCEQ7L2J0 689 aaKnown RBP21.16■□□□□ 0.98
VPS53-211ENST00000571805 RNF113BQ8IZP6 322 aaKnown RBP21.16■□□□□ 0.98
VPS53-211ENST00000571805 OR4N4Q8N0Y3 316 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 ASB12Q8WXK4 309 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 MRPS2Q9Y399 296 aaKnown RBP21.16■□□□□ 0.98
VPS53-211ENST00000571805 SIRT4Q9Y6E7 314 aaPredicted RBP21.16■□□□□ 0.98
VPS53-211ENST00000571805 ZC3H12DA2A288 527 aaKnown RBP21.16■□□□□ 0.98
VPS53-211ENST00000571805 A6NCN8 305 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 SLC2A2P11168 524 aaPredicted RBP21.16■□□□□ 0.98
VPS53-211ENST00000571805 PTBP1P26599 531 aaKnown RBP eCLIP21.16■□□□□ 0.984e-7■■■■■ 29.2
VPS53-211ENST00000571805 BDH1Q02338 343 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 FIGLAQ6QHK4 219 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 TMEFF1Q8IYR6 380 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 ACBD7Q8N6N7 88 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 FANK1Q8TC84 345 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 TMEM239Q8WW34 195 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 DMRTB1Q96MA1 342 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 HS6ST2Q96MM7 605 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 FRMD6Q96NE9 622 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 HCAR1Q9BXC0 346 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 TMEM168Q9H0V1 697 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 FN3KQ9H479 309 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 ADAP2Q9NPF8 381 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 B3GAT2Q9NPZ5 323 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 ATP13A2Q9NQ11 1180 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 MALT1Q9UDY8 824 aa21.16■□□□□ 0.98
VPS53-211ENST00000571805 CENPXA8MT69 81 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 C12orf71A8MTZ7 269 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 PEX12O00623 359 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 STX11O75558 287 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 NID1P14543 1247 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 ACTR1BP42025 376 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 ACTR1AP61163 376 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 RIN1Q13671 783 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 BABAM2Q9NXR7 383 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 NUFIP1Q9UHK0 495 aaKnown RBP21.15■□□□□ 0.98
VPS53-211ENST00000571805 PCDHGB7Q9Y5F8 929 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 CDHR4A6H8M9 788 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 FAM172BPA6NC97 362 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 URADA6NGE7 173 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 ZNF860A6NHJ4 632 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 GTPBP1O00178 669 aaKnown RBP21.15■□□□□ 0.98
VPS53-211ENST00000571805 RNF13O43567 381 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 SYCE2Q6PIF2 218 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 UBE2Q1Q7Z7E8 422 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 ABI3BPQ7Z7G0 1075 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 LNX2Q8N448 690 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 TMEM99Q8N816 258 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 NLGN4YQ8NFZ3 816 aaPredicted RBP21.15■□□□□ 0.98
VPS53-211ENST00000571805 KISS1RQ969F8 398 aaPredicted RBP21.15■□□□□ 0.98
VPS53-211ENST00000571805 BMFQ96LC9 184 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 WDR92Q96MX6 357 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms