RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 METTL21AQ8WXB1 218 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 SLC25A28Q96A46 364 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 TSPAN17Q96FV3 270 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 THOC3Q96J01 351 aaKnown RBP10.16□□□□□ -0.78
CLK3-226ENST00000569406 CASD1Q96PB1 797 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 MS4A12Q9NXJ0 267 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 NTMQ9P121 344 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 CHRNA9Q9UGM1 479 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 ERVW-1Q9UQF0 538 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 CHST2Q9Y4C5 530 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 NINQ8N4C6 2090 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 KDM4EB2RXH2 506 aaPredicted RBP10.16□□□□□ -0.78
CLK3-226ENST00000569406 STK25O00506 426 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 LANCL1O43813 399 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 SUSD5O60279 629 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 NCR1O76036 304 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 ADCYAP1P18509 176 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 SLC6A4P31645 630 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 AHRP35869 848 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 NFKB2Q00653 900 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 HTR4Q13639 388 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 SLC35D3Q5M8T2 416 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 CPZQ66K79 652 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 NXPE4Q6UWF7 544 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 DDX53Q86TM3 631 aaKnown RBP10.16□□□□□ -0.78
CLK3-226ENST00000569406 PIM3Q86V86 326 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 DNAAF1Q8NEP3 725 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 ZNF558Q96NG5 402 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 TRIB3Q96RU7 358 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 TMEM231Q9H6L2 316 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 LUZP4Q9P127 313 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 NPFFR2Q9Y5X5 522 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 EEF1E1O43324 174 aaKnown RBP10.15□□□□□ -0.78
CLK3-226ENST00000569406 SOCS5O75159 536 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 HLA-DQB1P01920 261 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 HPXP02790 462 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 RHOQP17081 205 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 ADH6P28332 368 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 HOXA9P31269 272 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 LSM6P62312 80 aaKnown RBP10.15□□□□□ -0.78
CLK3-226ENST00000569406 PPP3R1P63098 170 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 MRPS10P82664 201 aaKnown RBP10.15□□□□□ -0.78
CLK3-226ENST00000569406 CAMK2GQ13555 558 aaPredicted RBP10.15□□□□□ -0.78
CLK3-226ENST00000569406 ARHGEF7Q14155 803 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 PDZD11Q5EBL8 140 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 ZDHHC21Q8IVQ6 265 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 MYLIPQ8WY64 445 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 ING5Q8WYH8 240 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 RHBDF1Q96CC6 855 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 MSLNLQ96KJ4 702 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 FAM83CQ9BQN1 747 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 VN1R3Q9BXE9 311 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 CACNG6Q9BXT2 260 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 SLC38A1Q9H2H9 487 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 HHATLQ9HCP6 504 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 SPTBN5Q9NRC6 3674 aaKnown RBP10.15□□□□□ -0.78
CLK3-226ENST00000569406 SCN8AQ9UQD0 1980 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 ASPDHA6ND91 283 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 C5orf58C9J3I9 102 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 HOXD9P28356 352 aaPredicted RBP10.15□□□□□ -0.78
CLK3-226ENST00000569406 PPM1FP49593 454 aaPredicted RBP10.15□□□□□ -0.78
CLK3-226ENST00000569406 GEMP55040 296 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 ZNF660Q6AZW8 331 aaPredicted RBP10.15□□□□□ -0.78
CLK3-226ENST00000569406 B3GNT7Q8NFL0 401 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 OR2L8Q8NGY9 312 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 VWCEQ96DN2 955 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 CLUHP3Q96NS8 147 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 GAR1Q9NY12 217 aaKnown RBP10.15□□□□□ -0.78
CLK3-226ENST00000569406 FZD4Q9ULV1 537 aa10.15□□□□□ -0.78
CLK3-226ENST00000569406 A0A0D9SEW6 157 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 A0A1B0GTL3 188 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 PHOX2AO14813 284 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 CASKO14936 926 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 BNIP3LO60238 219 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 IFNA2P01563 188 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 RPLP2P05387 115 aaKnown RBP10.15□□□□□ -0.79
CLK3-226ENST00000569406 PRSS56P0CW18 603 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 GJA4P35212 333 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 DNAJB13P59910 316 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 FOXK1P85037 733 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 ZNF628Q5EBL2 1059 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 FAM69AQ5T7M9 428 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 COL13A1Q5TAT6 717 aaPredicted RBP10.15□□□□□ -0.79
CLK3-226ENST00000569406 ZNF385CQ66K41 422 aaPredicted RBP10.15□□□□□ -0.79
CLK3-226ENST00000569406 B3GNTL1Q67FW5 361 aaPredicted RBP10.15□□□□□ -0.79
CLK3-226ENST00000569406 ZNF783Q6ZMS7 281 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 GPR137CQ8N3F9 429 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 SMIM14Q96QK8 99 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 KCNJ15Q99712 375 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 FN3KQ9H479 309 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 ENAMQ9NRM1 1142 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 ASF1BQ9NVP2 202 aa10.15□□□□□ -0.79
CLK3-226ENST00000569406 PRG3Q9Y2Y8 225 aaPredicted RBP10.15□□□□□ -0.79
CLK3-226ENST00000569406 SGK494L7N484 410 aa10.14□□□□□ -0.79
CLK3-226ENST00000569406 PRRG1O14668 218 aa10.14□□□□□ -0.79
CLK3-226ENST00000569406 PPIHO43447 177 aaKnown RBP10.14□□□□□ -0.79
CLK3-226ENST00000569406 TCF21O43680 179 aa10.14□□□□□ -0.79
CLK3-226ENST00000569406 OR2T1O43869 369 aa10.14□□□□□ -0.79
CLK3-226ENST00000569406 CNR1P21554 472 aa10.14□□□□□ -0.79
CLK3-226ENST00000569406 RGRP47804 291 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms