RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 KIR2DL3P43628 341 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 PHC1P78364 1004 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 CASP8Q14790 479 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 CD226Q15762 336 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 SPATA19Q7Z5L4 167 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 ZNF527Q8NB42 609 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 OR5D16Q8NGK9 328 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 OR4A15Q8NGL6 344 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 ZBTB8AQ96BR9 441 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 INTS12Q96CB8 462 aaKnown RBP18.3■□□□□ 0.52
CLK3-225ENST00000569063 DOCK7Q96N67 2140 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 AIG1Q9NVV5 245 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 STOML1Q9UBI4 398 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 VDAC3Q9Y277 283 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 CSMD1Q96PZ7 3565 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 RNF103-CHMP3A0A140T963 221 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 SLC22A20A6NK97 555 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 EEF1E1-BLOC1S5C9J1V9 151 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 NPIPB9F8W1W9 429 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 H0YC42 278 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 EEF1E1O43324 174 aaKnown RBP18.29■□□□□ 0.52
CLK3-225ENST00000569063 CRHP06850 196 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 MATN1P21941 496 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 TPD52P55327 224 aaPredicted RBP18.29■□□□□ 0.52
CLK3-225ENST00000569063 CLDN20P56880 219 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 PLPPR5Q32ZL2 321 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 SPANXN4Q5MJ08 99 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 OR2A2Q6IF42 318 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 WDR75Q8IWA0 830 aaKnown RBP18.29■□□□□ 0.52
CLK3-225ENST00000569063 GCNT2Q8N0V5 402 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 GTPBP8Q8N3Z3 284 aaPredicted RBP18.29■□□□□ 0.52
CLK3-225ENST00000569063 METTL25Q8N6Q8 603 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 CHDHQ8NE62 594 aaPredicted RBP18.29■□□□□ 0.52
CLK3-225ENST00000569063 B4GALNT2Q8NHY0 566 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 MIPOL1Q8TD10 442 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 SDF2Q99470 211 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 PIGMQ9H3S5 423 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 SERHL2Q9H4I8 314 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 MED17Q9NVC6 651 aa18.29■□□□□ 0.52
CLK3-225ENST00000569063 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 SHISA8B8ZZ34 492 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 E9PBE3 544 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 KLF11O14901 512 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 SEC14L5O43304 696 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 TNFSF13O75888 250 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 PSMA4P25789 261 aaKnown RBP18.28■□□□□ 0.52
CLK3-225ENST00000569063 ZNF41P51814 821 aaPredicted RBP18.28■□□□□ 0.52
CLK3-225ENST00000569063 ATP12AP54707 1039 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 RPS26P62854 115 aaKnown RBP18.28■□□□□ 0.52
CLK3-225ENST00000569063 SNTB1Q13884 538 aaKnown RBP18.28■□□□□ 0.52
CLK3-225ENST00000569063 FLYWCH1Q4VC44 716 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 AGBL2Q5U5Z8 902 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 P4HA3Q7Z4N8 544 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 GGNQ86UU5 652 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 ANKRD46Q86W74 232 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 KIF18BQ86Y91 864 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 CLEC4FQ8N1N0 589 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 SH3YL1Q96HL8 342 aaPredicted RBP18.28■□□□□ 0.52
CLK3-225ENST00000569063 TEX37Q96LM6 180 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 WDR55Q9H6Y2 383 aaPredicted RBP18.28■□□□□ 0.52
CLK3-225ENST00000569063 MARCOQ9UEW3 520 aaPredicted RBP18.28■□□□□ 0.52
CLK3-225ENST00000569063 ZNF175Q9Y473 711 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 GPR45Q9Y5Y3 372 aa18.28■□□□□ 0.52
CLK3-225ENST00000569063 A0A1W2PNV4 684 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 H3BNH8 94 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 AK1P00568 194 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 KITP10721 976 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 UQCRC2P22695 453 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 EPHA3P29320 983 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 S100A3P33764 101 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 RPS3AP61247 264 aaKnown RBP18.27■□□□□ 0.52
CLK3-225ENST00000569063 UFM1P61960 85 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 SORDQ00796 357 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 ZNF117Q03924 483 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 FAM174BQ3ZCQ3 159 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.27■□□□□ 0.52
CLK3-225ENST00000569063 ZZZ3Q8IYH5 903 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 PHOSPHO1Q8TCT1 267 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 FAM222BQ8WU58 562 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 MAELQ96JY0 434 aaKnown RBP18.27■□□□□ 0.52
CLK3-225ENST00000569063 SLC35G5Q96KT7 338 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 NPAS1Q99742 590 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 KLHDC3Q9BQ90 382 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 PINK1Q9BXM7 581 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 CRIM1Q9NZV1 1036 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 BTNL2Q9UIR0 455 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 DTNAQ9Y4J8 743 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 TACC2O95359 2948 aa18.27■□□□□ 0.52
CLK3-225ENST00000569063 NUP214P35658 2090 aaPredicted RBP18.27■□□□□ 0.51
CLK3-225ENST00000569063 NPIPA5A0A0B4J1W7 369 aa18.26■□□□□ 0.51
CLK3-225ENST00000569063 GOLGA8QA0A0J9YX86 632 aa18.26■□□□□ 0.51
CLK3-225ENST00000569063 GOLGA8OA6NCC3 632 aa18.26■□□□□ 0.51
CLK3-225ENST00000569063 NPIPA7E9PJI5 369 aa18.26■□□□□ 0.51
CLK3-225ENST00000569063 GOLGA8NF8WBI6 632 aa18.26■□□□□ 0.51
CLK3-225ENST00000569063 CPSF4O95639 269 aaKnown RBP18.26■□□□□ 0.51
CLK3-225ENST00000569063 LINGO3P0C6S8 592 aa18.26■□□□□ 0.51
CLK3-225ENST00000569063 NPIPA8P0DM63 369 aa18.26■□□□□ 0.51
CLK3-225ENST00000569063 SUMO3P55854 103 aaPredicted RBP18.26■□□□□ 0.51
CLK3-225ENST00000569063 RAC1P63000 192 aa18.26■□□□□ 0.51
CLK3-225ENST00000569063 ARHGAP11BQ3KRB8 267 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms