RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, human

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS39-210	ENST00000568357	MBD3L3	A6NE82	208 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	MBD3L5	A6NJ08	208 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	CLCA1	A8K7I4	914 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	NPIPB9	F8W1W9	429 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357		H0YC42	278 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	SCD	O00767	359 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	FCMR	O60667	390 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	IL2RA	P01589	272 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	PGR	P06401	933 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	IDO1	P14902	403 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	IGFBP2	P18065	325 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	ATP6V1C1	P21283	382 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	MSX1	P28360	303 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	ZNF136	P52737	540 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	SUCLG1	P53597	346 aa	Known RBP	13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	TPD52	P55327	224 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	RCAN2	Q14206	197 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	BCL2A1	Q16548	175 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	GLYR1	Q49A26	553 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	PDCD4	Q53EL6	469 aa	Known RBP	13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	OLIG3	Q7RTU3	272 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	GOLGA6L1	Q8N7Z2	621 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	C9orf106	Q8NAJ2	232 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	CHDH	Q8NE62	594 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	MIPOL1	Q8TD10	442 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	LRRC8C	Q8TDW0	803 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	SH3YL1	Q96HL8	342 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	SLC35G5	Q96KT7	338 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	UCN2	Q96RP3	112 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	NPAS1	Q99742	590 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	TREX2	Q9BQ50	279 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	HOXD1	Q9GZZ0	328 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	OR51I1	Q9H343	314 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	MED12	Q93074	2177 aa		13.58	□□□□□ -0.24
VPS39-210	ENST00000568357	MTOR	P42345	2549 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	CCDC154	A6NI56	674 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	DUXA	A6NLW8	204 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	UBD	O15205	165 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	OIP5	O43482	229 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	SLC22A3	O75751	556 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	GSN	P06396	782 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	OR12D1	P0DN82	309 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	PEPD	P12955	493 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	BMP5	P22003	454 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	CDKN2C	P42773	168 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	AGFG1	P52594	562 aa	Known RBP	13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	ATP12A	P54707	1039 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	PPP2R2A	P63151	447 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	FOXF2	Q12947	444 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	SLC25A35	Q3KQZ1	300 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	FLYWCH1	Q4VC44	716 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	SAXO2	Q658L1	398 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	MEX3B	Q6ZN04	569 aa	Known RBP	13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	GDF7	Q7Z4P5	450 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	UBQLNL	Q8IYU4	475 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	RELL2	Q8NC24	303 aa	Predicted RBP	13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	GLB1L3	Q8NCI6	653 aa	Predicted RBP	13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	XAGE5	Q8WWM1	108 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	RAB8B	Q92930	207 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	NEURL3	Q96EH8	262 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	PANX1	Q96RD7	426 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	ZBTB18	Q99592	522 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	PIGQ	Q9BRB3	760 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	SLC35A5	Q9BS91	424 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	TRIM8	Q9BZR9	551 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	RUBCNL	Q9H714	662 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	SDR39U1	Q9NRG7	319 aa	Predicted RBP	13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	INTS9	Q9NV88	658 aa	Known RBP	13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	ZNF629	Q9UEG4	869 aa	Predicted RBP	13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	KCNE5	Q9UJ90	142 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	VDAC3	Q9Y277	283 aa		13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	PHF3	Q92576	2039 aa	Known RBP	13.57	□□□□□ -0.24
VPS39-210	ENST00000568357	CCDC168	Q8NDH2	2452 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	PRAMEF27	A3QJZ7	478 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357		H3BML4	177 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	LINC01387	J3KSC0	135 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	TGM6	O95932	706 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	IDH3A	P50213	366 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	DLX5	P56178	289 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	CLDN20	P56880	219 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	ZNF117	Q03924	483 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	TESK1	Q15569	626 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	GSTA3	Q16772	222 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	ARHGAP11B	Q3KRB8	267 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	HEPHL1	Q6MZM0	1159 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	CBLN3	Q6UW01	205 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	ZNF621	Q6ZSS3	439 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	MISP	Q8IVT2	679 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	OR9I1	Q8NGQ6	314 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	B4GALNT2	Q8NHY0	566 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	PHOSPHO1	Q8TCT1	267 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	DYDC1	Q8WWB3	177 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	WNT2B	Q93097	391 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	EBF4	Q9BQW3	602 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	MED17	Q9NVC6	651 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	ZIM2	Q9NZV7	527 aa		13.56	□□□□□ -0.24
VPS39-210	ENST00000568357	CLCF1	Q9UBD9	225 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms