RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 NXT1Q9UKK6 140 aaKnown RBP3.9□□□□□ -1.79
SPG11-211ENST00000558561 RAB21Q9UL25 225 aa3.9□□□□□ -1.79
SPG11-211ENST00000558561 SLC12A4Q9UP95 1085 aa3.9□□□□□ -1.79
SPG11-211ENST00000558561 B3GNT3Q9Y2A9 372 aa3.9□□□□□ -1.79
SPG11-211ENST00000558561 DTX4Q9Y2E6 619 aa3.9□□□□□ -1.79
SPG11-211ENST00000558561 PLLPQ9Y342 182 aa3.9□□□□□ -1.79
SPG11-211ENST00000558561 FIS1Q9Y3D6 152 aa3.9□□□□□ -1.79
SPG11-211ENST00000558561 CCL27Q9Y4X3 112 aa3.9□□□□□ -1.79
SPG11-211ENST00000558561 COPG1Q9Y678 874 aaKnown RBP3.9□□□□□ -1.79
SPG11-211ENST00000558561 IKBKGQ9Y6K9 419 aa3.9□□□□□ -1.79
SPG11-211ENST00000558561 SETXQ7Z333 2677 aaKnown RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 WIPF3A6NGB9 483 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 SAGE2PA6NJ88 616 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 GABRR3A8MPY1 467 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 SYCE1LA8MT33 242 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 C17orf105B2RV13 164 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 KDM4EB2RXH2 506 aaPredicted RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 B4DXG7 233 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 FOXE1O00358 373 aaPredicted RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 CTIFO43310 598 aaKnown RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 TYROBPO43914 113 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 RBMXL2O75526 392 aaKnown RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 SKAP2O75563 359 aaPredicted RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 OR2J2O76002 312 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 PDE9AO76083 593 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 OR6B1O95007 311 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 SCELO95171 688 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 NADKO95544 446 aaPredicted RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 GPR75O95800 540 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 SP1P08047 785 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 ITGA5P08648 1049 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 CD63P08962 238 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 RFPL3SP0C7P2 107 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 LINC00032P0C843 101 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 CPA3P15088 417 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 CD1EP15812 388 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 CNTFP26441 200 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 SOX3P41225 446 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 SSR2P43308 183 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 XKP51811 444 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 TDGF1P3P51864 188 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 STXBP1P61764 594 aaKnown RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 HERVK_113P63132 956 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 ERVK-8P63133 956 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 TUBA4AP68366 448 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 ARG2P78540 354 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 IGLV3-21P80748 117 aaPredicted RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 ASPHQ12797 758 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 STX4Q12846 297 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 MFSD13AQ14CX5 517 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 NAA25Q14CX7 972 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 EXOSC7Q15024 291 aaKnown RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 KIAA0040Q15053 153 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 OR1C1Q15619 314 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 RFTN2Q52LD8 501 aaPredicted RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 TNFAIP8L3Q5GJ75 292 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 ZNF766Q5HY98 468 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 LGSNQ5TDP6 509 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 TTC19Q6DKK2 380 aaPredicted RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 ANKRD26P1Q6NSI1 321 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 WDR93Q6P2C0 686 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 KLC3Q6P597 504 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 TRIM40Q6P9F5 258 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 PLXDC2Q6UX71 529 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 ZYG11AQ6WRX3 759 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 C3P1Q6ZMU1 363 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 QSOX2Q6ZRP7 698 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 DCDC5Q6ZRR9 648 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 COMMD6Q7Z4G1 85 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 TDRPQ86YL5 185 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 C9orf40Q8IXQ3 194 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 SRRM1Q8IYB3 904 aaKnown RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 ZNF595Q8IYB9 648 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 PRR22Q8IZ63 422 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 GALNT4Q8N4A0 578 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 MDS2Q8NDY4 140 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 B3GNT7Q8NFL0 401 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 OR4N2Q8NGD1 307 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 OR6Y1Q8NGX8 325 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 AGR3Q8TD06 166 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 SLC2A12Q8TD20 617 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 AGAP11Q8TF27 550 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 C16orf78Q8WTQ4 265 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 FAR1Q8WVX9 515 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 DDB2Q92466 427 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 KAT2AQ92830 837 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 L3HYPDHQ96EM0 354 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 C11orf24Q96F05 449 aaPredicted RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 CNRIP1Q96F85 164 aaPredicted RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 ZNF764Q96H86 408 aaPredicted RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 PPP1R36Q96LQ0 422 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 ZNF681Q96N22 645 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 IP6K3Q96PC2 410 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 FYTTD1Q96QD9 318 aaKnown RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 OR1F2PQ96R84 312 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 LPAR4Q99677 370 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 NPLQ9BXD5 320 aaPredicted RBP3.89□□□□□ -1.79
SPG11-211ENST00000558561 ERVK-6Q9BXR3 956 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 DEFB126Q9BYW3 111 aa3.89□□□□□ -1.79
SPG11-211ENST00000558561 ACPTQ9BZG2 426 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms