RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-221	ENST00000555773	FAM173A	Q9BQD7	235 aa		11.41	□□□□□ -0.58
SHMT2-221	ENST00000555773	DOHH	Q9BU89	302 aa		11.41	□□□□□ -0.58
SHMT2-221	ENST00000555773	OSBPL11	Q9BXB4	747 aa		11.41	□□□□□ -0.58
SHMT2-221	ENST00000555773	PINK1	Q9BXM7	581 aa		11.41	□□□□□ -0.58
SHMT2-221	ENST00000555773	TRIM15	Q9C019	465 aa		11.41	□□□□□ -0.58
SHMT2-221	ENST00000555773	QRSL1	Q9H0R6	528 aa	Known RBP	11.41	□□□□□ -0.58
SHMT2-221	ENST00000555773	PROK2	Q9HC23	129 aa		11.41	□□□□□ -0.58
SHMT2-221	ENST00000555773	DCAF13	Q9NV06	445 aa	Known RBP	11.41	□□□□□ -0.58
SHMT2-221	ENST00000555773	KLHL28	Q9NXS3	571 aa		11.41	□□□□□ -0.58
SHMT2-221	ENST00000555773	BAG5	Q9UL15	447 aa		11.41	□□□□□ -0.58
SHMT2-221	ENST00000555773	POMP	Q9Y244	141 aa		11.41	□□□□□ -0.58
SHMT2-221	ENST00000555773	ZNF443	Q9Y2A4	671 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-221	ENST00000555773	PKD1L2	Q7Z442	2459 aa		11.41	□□□□□ -0.58
SHMT2-221	ENST00000555773	LOC400499	M0QZD8	3231 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	MGA	Q8IWI9	3026 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	ERICH4	A6NGS2	130 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	ERVH48-1	M5A8F1	160 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	SYT5	O00445	386 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	SUV39H1	O43463	412 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	PEX1	O43933	1283 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	CIB2	O75838	187 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	SORBS2	O94875	1100 aa	Known RBP	11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	CSTA	P01040	98 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	PDGFA	P04085	211 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	FAM87A	P0C7U9	286 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	CRYBA2	P53672	197 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	KCNJ2	P63252	427 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	EEF1A1	P68104	462 aa	Known RBP	11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	DMTN	Q08495	405 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	LRRC23	Q53EV4	343 aa	Predicted RBP	11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	CYBRD1	Q53TN4	286 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	FNDC7	Q5VTL7	733 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	LCN8	Q6JVE9	175 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	CBLL1	Q75N03	491 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	VRK2	Q86Y07	508 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	ZNF440	Q8IYI8	595 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	PHOSPHO1	Q8TCT1	267 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	DUSP19	Q8WTR2	217 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	CCDC124	Q96CT7	223 aa	Known RBP	11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	DTNBP1	Q96EV8	351 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	TMEM41A	Q96HV5	264 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	LRGUK	Q96M69	825 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	LAT2	Q9GZY6	243 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	EXOSC3	Q9NQT5	275 aa	Known RBP	11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	OLAH	Q9NV23	265 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	SLC13A4	Q9UKG4	626 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	SAMD4A	Q9UPU9	718 aa	Known RBP	11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	TP53TG5	Q9Y2B4	290 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	WIF1	Q9Y5W5	379 aa		11.4	□□□□□ -0.58
SHMT2-221	ENST00000555773	MAP1B	P46821	2468 aa	Known RBP	11.4	□□□□□ -0.59
SHMT2-221	ENST00000555773	IGLV3-32	A0A0A0MS00	114 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	CENPVL1	A0A0U1RR11	272 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	CDHR4	A6H8M9	788 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	AQP12B	A6NM10	295 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773		K7EM74	188 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	ADAM10	O14672	748 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	ZNF264	O43296	627 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	SCO2	O43819	266 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	TRIM3	O75382	744 aa	Predicted RBP	11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	LGI1	O95970	557 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	SERPINA1	P01009	418 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	UBL4A	P11441	157 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	NQO1	P15559	274 aa	Known RBP	11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	HOXB6	P17509	224 aa	Known RBP	11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	CD247	P20963	164 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	ELAVL4	P26378	380 aa	Known RBP	11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	FLOT2	Q14254	428 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	ZNF169	Q14929	603 aa	Predicted RBP	11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	DUSP7	Q16829	419 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	PRAMEF20	Q5VT98	475 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	BICRAL	Q6AI39	1079 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	TIGD3	Q6B0B8	471 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	RPUSD3	Q6P087	351 aa	Known RBP	11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	GALNTL5	Q7Z4T8	443 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	PLCZ1	Q86YW0	608 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	SPPL2C	Q8IUH8	684 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	SULF2	Q8IWU5	870 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	AQP12A	Q8IXF9	295 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	CLIP4	Q8N3C7	705 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	RBMXL3	Q8N7X1	1067 aa	Known RBP	11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	SMYD1	Q8NB12	490 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	FAM98A	Q8NCA5	519 aa	Known RBP	11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	TOR1AIP2	Q8NFQ8	470 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	OR2M7	Q8NG81	312 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	PROX1	Q92786	737 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	UTP4	Q969X6	686 aa	Known RBP	11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	GALNT9	Q9HCQ5	603 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	BOK	Q9UMX3	212 aa	Predicted RBP	11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	B3GNT3	Q9Y2A9	372 aa		11.39	□□□□□ -0.59
SHMT2-221	ENST00000555773	TMEM229A	B2RXF0	380 aa		11.38	□□□□□ -0.59
SHMT2-221	ENST00000555773	SNPH	O15079	494 aa		11.38	□□□□□ -0.59
SHMT2-221	ENST00000555773	HCRTR2	O43614	444 aa		11.38	□□□□□ -0.59
SHMT2-221	ENST00000555773	TPST1	O60507	370 aa		11.38	□□□□□ -0.59
SHMT2-221	ENST00000555773	CBR3	O75828	277 aa		11.38	□□□□□ -0.59
SHMT2-221	ENST00000555773	ZNF682	O95780	498 aa		11.38	□□□□□ -0.59
SHMT2-221	ENST00000555773	OPN1SW	P03999	348 aa		11.38	□□□□□ -0.59
SHMT2-221	ENST00000555773	FES	P07332	822 aa		11.38	□□□□□ -0.59
SHMT2-221	ENST00000555773	UMPS	P11172	480 aa		11.38	□□□□□ -0.59
SHMT2-221	ENST00000555773	SLC6A8	P48029	635 aa		11.38	□□□□□ -0.59
SHMT2-221	ENST00000555773	MASP1	P48740	699 aa		11.38	□□□□□ -0.59

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