RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 RCAN2Q14206 197 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 TMEM44Q2T9K0 475 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 KLHL26Q53HC5 615 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 C16orf62Q7Z3J2 963 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 LIX1LQ8IVB5 337 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 MISPQ8IVT2 679 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 ZNF614Q8N883 585 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 TNIP2Q8NFZ5 429 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 ZPLD1Q8TCW7 415 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 MARVELD3Q96A59 401 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 ZNF350Q9GZX5 532 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 HOXD1Q9GZZ0 328 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 SLC6A13Q9NSD5 602 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 VDAC3Q9Y277 283 aa12.41□□□□□ -0.42
SHMT2-219ENST00000555563 CENPVL1A0A0U1RR11 272 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 FAM234BA2RU67 622 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 OR2M5A3KFT3 312 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 MBD3L4A6NDZ8 208 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-219ENST00000555563 MBD3L3A6NE82 208 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-219ENST00000555563 MBD3L5A6NJ08 208 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-219ENST00000555563 CLCA1A8K7I4 914 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 H3BML4 177 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 RFXANKO14593 260 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 HNRNPRO43390 633 aaKnown RBP12.4□□□□□ -0.42
SHMT2-219ENST00000555563 OIP5O43482 229 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 HCRTR2O43614 444 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 STX11O75558 287 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 AGR2O95994 175 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 SNRPB2P08579 225 aaKnown RBP12.4□□□□□ -0.42
SHMT2-219ENST00000555563 CEACAM8P31997 349 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-219ENST00000555563 TIMP3P35625 211 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 MRPL19P49406 292 aaKnown RBP12.4□□□□□ -0.42
SHMT2-219ENST00000555563 POLR2JP52435 117 aaKnown RBP12.4□□□□□ -0.42
SHMT2-219ENST00000555563 ATP12AP54707 1039 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 STX1BP61266 288 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 TFF3Q07654 80 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 SF3B4Q15427 424 aaKnown RBP eCLIP12.4□□□□□ -0.424e-8■■■■■ 53
SHMT2-219ENST00000555563 PLPPR5Q32ZL2 321 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 NDUFAF6Q330K2 333 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 ARHGAP11BQ3KRB8 267 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 GLYR1Q49A26 553 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-219ENST00000555563 HEPHL1Q6MZM0 1159 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 PLXDC2Q6UX71 529 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 ZNF621Q6ZSS3 439 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 MSANTD1Q6ZTZ1 278 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 RNF130Q86XS8 419 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 UBQLNLQ8IYU4 475 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 TRIML2Q8N7C3 387 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 C9orf106Q8NAJ2 232 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 B4GALNT2Q8NHY0 566 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 MBD3L2Q8NHZ7 208 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-219ENST00000555563 PNPT1Q8TCS8 783 aaKnown RBP12.4□□□□□ -0.42
SHMT2-219ENST00000555563 PHOSPHO1Q8TCT1 267 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 XAGE5Q8WWM1 108 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 VPS33AQ96AX1 596 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 THOC1Q96FV9 657 aaKnown RBP12.4□□□□□ -0.42
SHMT2-219ENST00000555563 NPAS1Q99742 590 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 PIGQQ9BRB3 760 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 CCDC28BQ9BUN5 200 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 NMUR2Q9GZQ4 415 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 NPDC1Q9NQX5 325 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-219ENST00000555563 MED17Q9NVC6 651 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 EXD2Q9NVH0 621 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 CLCF1Q9UBD9 225 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 DTNAQ9Y4J8 743 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 PCNX3Q9H6A9 2034 aa12.4□□□□□ -0.42
SHMT2-219ENST00000555563 A0A087WZY1 265 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 HSPB2A8KAH6 182 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 H3BNH8 94 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 HMGN4O00479 90 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 SEC14L5O43304 696 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 KIAA0513O60268 411 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 FCMRO60667 390 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 EDF1O60869 148 aaKnown RBP12.39□□□□□ -0.43
SHMT2-219ENST00000555563 ZNF17P17021 662 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 MSX1P28360 303 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 ZNF41P51814 821 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-219ENST00000555563 GPR68Q15743 365 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 HSPB2Q16082 182 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 BCL2A1Q16548 175 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 GTDC1Q4AE62 458 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 PDZK1Q5T2W1 519 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 ATAD3BQ5T9A4 648 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 CBLN3Q6UW01 205 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 MTERF4Q7Z6M4 381 aaKnown RBP12.39□□□□□ -0.43
SHMT2-219ENST00000555563 ADGRE4PQ86SQ3 457 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 RELL2Q8NC24 303 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-219ENST00000555563 SMPDL3BQ92485 455 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 ROPN1LQ96C74 230 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 RMND5AQ9H871 391 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 CALHM2Q9HA72 323 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 KCNJ16Q9NPI9 418 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 KCNE5Q9UJ90 142 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 MKLN1Q9UL63 735 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 CARD8Q9Y2G2 431 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 ZNF337Q9Y3M9 751 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 WDR45Q9Y484 360 aa12.39□□□□□ -0.43
SHMT2-219ENST00000555563 UQCRHLA0A096LP55 91 aa12.38□□□□□ -0.43
SHMT2-219ENST00000555563 PRAMEF27A3QJZ7 478 aa12.38□□□□□ -0.43
SHMT2-219ENST00000555563 C7orf72A4D263 438 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms