RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PLAURQ03405 335 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 NFATC3Q12968 1075 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 CPEB4Q17RY0 729 aaKnown RBP eCLIP24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 MEDAGQ5VYS4 303 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 GUSBP11Q6P575 273 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 C1orf210Q8IVY1 113 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 NRMQ8IXM6 262 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 CMIPQ8IY22 773 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 IQCF1Q8N6M8 205 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 TCEANCQ8N8B7 351 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 CNOT9Q92600 299 aaKnown RBP24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 DPYSL5Q9BPU6 564 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 TMEM27Q9HBJ8 222 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 CNIH4Q9P003 139 aa24.35■■□□□ 1.49
CCDC88C-205ENST00000553403 A0A1W2PPW3 197 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 SIGLEC6O43699 453 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 MAN1A2O60476 641 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 GABARAPO95166 117 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 EFNB1P98172 346 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 FGFBP1Q14512 234 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 MFSD4BQ5TF39 518 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 PRAMEF17Q5VTA0 474 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 ACSM5Q6NUN0 579 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 SLC27A4Q6P1M0 643 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 TMEM151BQ8IW70 566 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 CLDN22Q8N7P3 220 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 BCORP1Q8N888 145 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 POGLUT1Q8NBL1 392 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 OSTF1Q92882 214 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 SENP5Q96HI0 755 aaPredicted RBP24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 DCUN1D5Q9BTE7 237 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 CDCA4Q9BXL8 241 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 DSN1Q9H410 356 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 EGLN3Q9H6Z9 239 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 PNO1Q9NRX1 252 aaKnown RBP24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 SELENONQ9NZV5 590 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 CFL2Q9Y281 166 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 OR10H1Q9Y4A9 318 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 CPED1A4D0V7 1026 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 BCAS1O75363 584 aaPredicted RBP24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 NTN1O95631 604 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 LCKP06239 509 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 RHAGQ02094 409 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 PERM1Q5SV97 790 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 OIT3Q8WWZ8 545 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 ATOH1Q92858 354 aaPredicted RBP24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 ZC3H10Q96K80 434 aaKnown RBP24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 SLC46A1Q96NT5 459 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 PRRG3Q9BZD7 231 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 PLA2G12AQ9BZM1 189 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 DNAJB12Q9NXW2 375 aaKnown RBP24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 SRPK3Q9UPE1 567 aa24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 RPL36Q9Y3U8 105 aaKnown RBP24.34■■□□□ 1.49
CCDC88C-205ENST00000553403 HOXD12P35452 270 aa24.33■■□□□ 1.49
CCDC88C-205ENST00000553403 ACY1Q03154 408 aa24.33■■□□□ 1.49
CCDC88C-205ENST00000553403 TCF15Q12870 199 aa24.33■■□□□ 1.49
CCDC88C-205ENST00000553403 ARHGAP40Q5TG30 622 aa24.33■■□□□ 1.49
CCDC88C-205ENST00000553403 PLAG1Q6DJT9 500 aa24.33■■□□□ 1.49
CCDC88C-205ENST00000553403 ZNF574Q6ZN55 896 aaPredicted RBP24.33■■□□□ 1.49
CCDC88C-205ENST00000553403 MEX3DQ86XN8 651 aaKnown RBP24.33■■□□□ 1.49
CCDC88C-205ENST00000553403 SLC24A3Q9HC58 644 aa24.33■■□□□ 1.49
CCDC88C-205ENST00000553403 IL20Q9NYY1 176 aa24.33■■□□□ 1.49
CCDC88C-205ENST00000553403 DNAJC27Q9NZQ0 273 aa24.33■■□□□ 1.49
CCDC88C-205ENST00000553403 ZNF223Q9UK11 482 aaPredicted RBP24.33■■□□□ 1.49
CCDC88C-205ENST00000553403 ADAMTS20P59510 1910 aa24.33■■□□□ 1.48
CCDC88C-205ENST00000553403 SYNDIG1LA6NDD5 238 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 PRKYO43930 277 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 PIP5K1CO60331 668 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 SLC37A1P57057 533 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 ELAVL1Q15717 326 aaKnown RBP24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 MINDY4Q4G0A6 757 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 ZNF550Q7Z398 422 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 ZNF614Q8N883 585 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 OR4D9Q8NGE8 314 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 OR8D4Q8NGM9 314 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 TMEM239Q8WW34 195 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 FGF11Q92914 225 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 NAT6Q93015 286 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 TSLPQ969D9 159 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 HS6ST2Q96MM7 605 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 TRIM2Q9C040 744 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 GAREM1Q9H706 876 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 MKKSQ9NPJ1 570 aaPredicted RBP24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 FSCN3Q9NQT6 498 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 ATXN7L1Q9ULK2 861 aaPredicted RBP24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 NUP210LQ5VU65 1888 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 CACNA1EQ15878 2313 aa24.32■■□□□ 1.48
CCDC88C-205ENST00000553403 TCRBV16S1A1N1A0A5B0 115 aa24.31■■□□□ 1.48
CCDC88C-205ENST00000553403 PPICP45877 212 aa24.31■■□□□ 1.48
CCDC88C-205ENST00000553403 GPR4P46093 362 aa24.31■■□□□ 1.48
CCDC88C-205ENST00000553403 CCL7P80098 99 aa24.31■■□□□ 1.48
CCDC88C-205ENST00000553403 NCF4Q15080 339 aa24.31■■□□□ 1.48
CCDC88C-205ENST00000553403 SNAPC1Q16533 368 aa24.31■■□□□ 1.48
CCDC88C-205ENST00000553403 CTF1Q16619 201 aa24.31■■□□□ 1.48
CCDC88C-205ENST00000553403 TMPRSS9Q7Z410 1059 aa24.31■■□□□ 1.48
CCDC88C-205ENST00000553403 ARHGAP22Q7Z5H3 698 aa24.31■■□□□ 1.48
CCDC88C-205ENST00000553403 RABEPKQ7Z6M1 372 aa24.31■■□□□ 1.48
CCDC88C-205ENST00000553403 P2RY8Q86VZ1 359 aa24.31■■□□□ 1.48
CCDC88C-205ENST00000553403 ZSCAN1Q8NBB4 408 aa24.31■■□□□ 1.48
CCDC88C-205ENST00000553403 SLC38A2Q96QD8 506 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms