RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 PTX3P26022 381 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-216ENST00000552909 STOMP27105 288 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 PPM1FP49593 454 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF81P51508 661 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 GABREP78334 506 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 FOXD4Q12950 439 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-216ENST00000552909 SPHARQ15513 63 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 SNAPC1Q16533 368 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 ST3GAL2Q16842 350 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 C18orf21Q32NC0 220 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-216ENST00000552909 IQCCQ4KMZ1 466 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 IGSF11Q5DX21 431 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF628Q5EBL2 1059 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 PHF19Q5T6S3 580 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 UBE2R2Q712K3 238 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-216ENST00000552909 TRILQ7L0X0 811 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 MILR1Q7Z6M3 343 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 ANKRD46Q86W74 232 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 SLC5A8Q8N695 610 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 OR10G2Q8NGC3 310 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.15□□□□□ -1.26
LIMA1-216ENST00000552909 ASB11Q8WXH4 323 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 ZCCHC14Q8WYQ9 949 aaKnown RBP7.15□□□□□ -1.26
LIMA1-216ENST00000552909 ST8SIA2Q92186 375 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 SLC9A6Q92581 669 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 RSC1A1Q92681 617 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 UCN3Q969E3 161 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 CXorf40BQ96DE9 158 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 AHCYL2Q96HN2 611 aaKnown RBP7.15□□□□□ -1.26
LIMA1-216ENST00000552909 C12orf66Q96MD2 445 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 LINC00052Q96N35 136 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 RBP7Q96R05 134 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 EGFL8Q99944 293 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 TMEM43Q9BTV4 400 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-216ENST00000552909 GSX2Q9BZM3 304 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 OR52A5Q9H2C5 316 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 CCL27Q9Y4X3 112 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 OARD1Q9Y530 152 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 CDH10Q9Y6N8 788 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 PTPRQQ9UMZ3 2332 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 SPTBP11277 2137 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 A0A0A6YYJ9 748 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 SLC5A10A0PJK1 596 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 OR7A17O14581 309 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 TLX3O43711 291 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-216ENST00000552909 PSIP1O75475 530 aaKnown RBP7.15□□□□□ -1.27
LIMA1-216ENST00000552909 OTCP00480 354 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 CCKBRP32239 447 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 LSSP48449 732 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 GFERP55789 205 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 GPR85P60893 370 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 PPP1CAP62136 330 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 SQSTM1Q13501 440 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 IL18Q14116 193 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 TUSC1Q2TAM9 212 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 EEF1AKMT2Q5JPI9 291 aaKnown RBP7.15□□□□□ -1.27
LIMA1-216ENST00000552909 CNIH2Q6PI25 160 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 METAP1DQ6UB28 335 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-216ENST00000552909 TMEM107Q6UX40 140 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 RAB11FIP2Q7L804 512 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 ZNF551Q7Z340 670 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-216ENST00000552909 GOLGA7Q7Z5G4 137 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 ZNF655Q8N720 491 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-216ENST00000552909 OR10G6Q8NH81 332 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 CCDC74BQ96LY2 380 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 FOPNLQ96NB1 174 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 SLC46A1Q96NT5 459 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 MND1Q9BWT6 205 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 OR51B5Q9H339 312 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 LDAHQ9H6V9 325 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 PPP1R3EQ9H7J1 279 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 LRTM1Q9HBL6 345 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 FANCFQ9NPI8 374 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 B3GAT2Q9NPZ5 323 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 ASCL3Q9NQ33 180 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 POT1Q9NUX5 634 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 TXNL4BQ9NX01 149 aaKnown RBP7.15□□□□□ -1.27
LIMA1-216ENST00000552909 ASIC5Q9NY37 505 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 NUDT4Q9NZJ9 180 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 MALT1Q9UDY8 824 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 KIF25Q9UIL4 384 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 RAXQ9Y2V3 346 aa7.15□□□□□ -1.27
LIMA1-216ENST00000552909 NOSIPQ9Y314 301 aaKnown RBP7.15□□□□□ -1.27
LIMA1-216ENST00000552909 LSM2Q9Y333 95 aaKnown RBP7.15□□□□□ -1.27
LIMA1-216ENST00000552909 KLF2Q9Y5W3 355 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-216ENST00000552909 LILRA5A6NI73 299 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 KRBOX1C9JBD0 128 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 SGK494L7N484 410 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 RFXANKO14593 260 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 ADAMDEC1O15204 470 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 TPST2O60704 377 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 ZNF254O75437 659 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 UBXN7O94888 489 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 MPC2O95563 127 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 PAHP00439 452 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 HMGN1P05114 100 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 C8GP07360 202 aa7.14□□□□□ -1.27
LIMA1-216ENST00000552909 HIST1H2AGP0C0S8 130 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-216ENST00000552909 SLC35G4P0C7Q5 338 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms