RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 ESRP2Q9H6T0 727 aaKnown RBP11.41□□□□□ -0.58
USP28-212ENST00000544750 C12orf49Q9H741 205 aa11.41□□□□□ -0.58
USP28-212ENST00000544750 BARX1Q9HBU1 254 aaPredicted RBP11.41□□□□□ -0.58
USP28-212ENST00000544750 PFDN4Q9NQP4 134 aa11.41□□□□□ -0.58
USP28-212ENST00000544750 SLC35C2Q9NQQ7 365 aa11.41□□□□□ -0.58
USP28-212ENST00000544750 FBXO34Q9NWN3 711 aa11.41□□□□□ -0.58
USP28-212ENST00000544750 PAQR5Q9NXK6 330 aaPredicted RBP11.41□□□□□ -0.58
USP28-212ENST00000544750 VPS29Q9UBQ0 182 aa11.41□□□□□ -0.58
USP28-212ENST00000544750 MCTS1Q9ULC4 181 aaKnown RBP11.41□□□□□ -0.58
USP28-212ENST00000544750 C19orf53Q9UNZ5 99 aaPredicted RBP11.41□□□□□ -0.58
USP28-212ENST00000544750 MYO1GB0I1T2 1018 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 SHISA9B4DS77 424 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 UBFD1O14562 309 aaKnown RBP11.4□□□□□ -0.58
USP28-212ENST00000544750 ANGPTL1O95841 491 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 TUBBP07437 444 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 RAC1P63000 192 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 ZNF155Q12901 538 aaPredicted RBP11.4□□□□□ -0.58
USP28-212ENST00000544750 DECR1Q16698 335 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 SH2D4BQ5SQS7 431 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 PPP4R4Q6NUP7 873 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 WDR75Q8IWA0 830 aaKnown RBP11.4□□□□□ -0.58
USP28-212ENST00000544750 FAM9CQ8IZT9 166 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 BANPQ8N9N5 519 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 OR2V1Q8NHB1 315 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 HSD17B8Q92506 261 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 HS6ST2Q96MM7 605 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 TMEM109Q9BVC6 243 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 ROPN1BQ9BZX4 212 aaPredicted RBP11.4□□□□□ -0.58
USP28-212ENST00000544750 ROPN1Q9HAT0 212 aaPredicted RBP11.4□□□□□ -0.58
USP28-212ENST00000544750 NGBQ9NPG2 151 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 GRID1Q9ULK0 1009 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 VDAC3Q9Y277 283 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 B3GALT5Q9Y2C3 310 aa11.4□□□□□ -0.58
USP28-212ENST00000544750 DYSFO75923 2080 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 UQCRHLA0A096LP55 91 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 C7orf72A4D263 438 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 COPEO14579 308 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 SSX4O60224 188 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 RAMP1O60894 148 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 COQ9O75208 318 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 ESRRBO95718 433 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 IGKV1D-16P01601 117 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 MYL2P10916 166 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 HSD3B1P14060 373 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 CHN1P15882 459 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 CREB1P16220 341 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 HSD3B2P26439 372 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 CCT5P48643 541 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 HTR6P50406 440 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 CSTF3Q12996 717 aaKnown RBP11.39□□□□□ -0.59
USP28-212ENST00000544750 PCLAFQ15004 111 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 NRF1Q16656 503 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 CCDC153Q494R4 210 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 C11orf71Q6IPW1 123 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 ALKBH2Q6NS38 261 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 GPRIN3Q6ZVF9 776 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 ESPNLQ6ZVH7 1005 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 NUFIP2Q7Z417 695 aaKnown RBP11.39□□□□□ -0.59
USP28-212ENST00000544750 CDYL2Q8N8U2 506 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 POC1BQ8TC44 478 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 RNF128Q8TEB7 428 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 C16orf78Q8WTQ4 265 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 APOPT1Q96IL0 206 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 RHNO1Q9BSD3 238 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 LMF2Q9BU23 707 aaKnown RBP11.39□□□□□ -0.59
USP28-212ENST00000544750 BEX2Q9BXY8 128 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 SHCBP1LQ9BZQ2 653 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 TNFRSF12AQ9NP84 129 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 NMRK1Q9NWW6 199 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 CISD1Q9NZ45 108 aaKnown RBP11.39□□□□□ -0.59
USP28-212ENST00000544750 STOML1Q9UBI4 398 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 LPAR3Q9UBY5 353 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 SNX6Q9UNH7 406 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 SNX8Q9Y5X2 465 aa11.39□□□□□ -0.59
USP28-212ENST00000544750 A0A087WZY1 265 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 GOLGA8QA0A0J9YX86 632 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 FAM234BA2RU67 622 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 GOLGA8OA6NCC3 632 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 ALG1L2C9J202 215 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 GOLGA8NF8WBI6 632 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 UPK1AO00322 258 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 MANBAO00462 879 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 TNFSF11O14788 317 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 PCDH7O60245 1069 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 UTS2O95399 124 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 SYNGR4O95473 234 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 NTN1O95631 604 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 OPN1LWP04000 364 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 MPIP34949 423 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 MAP3K8P41279 467 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 CLK3P49761 638 aaKnown RBP11.38□□□□□ -0.59
USP28-212ENST00000544750 CASP9P55211 416 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 FOXA1P55317 472 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 C21orf58P58505 322 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 DNAJB13P59910 316 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 IRX1P78414 480 aaPredicted RBP11.38□□□□□ -0.59
USP28-212ENST00000544750 IFFO1Q0D2I5 559 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 LCP2Q13094 533 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 HEPACAMQ14CZ8 416 aa11.38□□□□□ -0.59
USP28-212ENST00000544750 PLPPR5Q32ZL2 321 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms