RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	IL21R	Q9HBE5	538 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	FBRSL1	Q9HCM7	1045 aa	Known RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	SEMA4B	Q9NPR2	832 aa	Predicted RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	THSD1	Q9NS62	852 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	KRT84	Q9NSB2	600 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	NINJ2	Q9NZG7	142 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	SEC14L4	Q9UDX3	406 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	NAGK	Q9UJ70	344 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	KCND3	Q9UK17	655 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	STAP1	Q9ULZ2	295 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	AAR2	Q9Y312	384 aa	Known RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	MRPS18C	Q9Y3D5	142 aa	Known RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	TNFRSF18	Q9Y5U5	241 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	DISP2	A7MBM2	1401 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	PXDNL	A1KZ92	1463 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	MET	P08581	1390 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	SLC5A10	A0PJK1	596 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	GLTPD2	A6NH11	291 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	CLDN24	A6NM45	220 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF814	B7Z6K7	855 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	MID1	O15344	667 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	TYROBP	O43914	113 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	GMFG	O60234	142 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	TULP3	O75386	442 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	AKAP3	O75969	853 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	TBX18	O95935	607 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	MT-CYB	P00156	380 aa	Predicted RBP	5.2	□□□□□ -1.58
CD44-231	ENST00000531110	LDLR	P01130	860 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	IL1A	P01583	271 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	OR2T7	P0C7T2	308 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	SCGB1A1	P11684	91 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	F3	P13726	295 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	CBL	P22681	906 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	G0S2	P27469	103 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	BDKRB2	P30411	391 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	OR1E1	P30953	314 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	TGFBR2	P37173	567 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	IL15	P40933	162 aa	Predicted RBP	5.2	□□□□□ -1.58
CD44-231	ENST00000531110	SLC1A2	P43004	574 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	GABRB2	P47870	512 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	HTR5A	P47898	357 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	CSNK1E	P49674	416 aa	Known RBP	5.2	□□□□□ -1.58
CD44-231	ENST00000531110	ERF	P50548	548 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	LUM	P51884	338 aa	Predicted RBP	5.2	□□□□□ -1.58
CD44-231	ENST00000531110	EMP2	P54851	167 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	WNT4	P56705	351 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	KCNK10	P57789	538 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	ACTB	P60709	375 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	CXCR4	P61073	352 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	ACTA2	P62736	377 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	ACTG1	P63261	375 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	ACTG2	P63267	376 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	ACTC1	P68032	377 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	ACTA1	P68133	377 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	TNFRSF9	Q07011	255 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	MERTK	Q12866	999 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	IL24	Q13007	206 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	MAPK7	Q13164	816 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	BAAT	Q14032	418 aa	Predicted RBP	5.2	□□□□□ -1.58
CD44-231	ENST00000531110	CALCRL	Q16602	461 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	RFX4	Q33E94	735 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	PLK5	Q496M5	336 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	ACER2	Q5QJU3	275 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	LRRN1	Q6UXK5	716 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	TMIGD1	Q6UXZ0	262 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	SPNS3	Q6ZMD2	512 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	TMEM26	Q6ZUK4	368 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	G2E3	Q7L622	706 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	5.2	□□□□□ -1.58
CD44-231	ENST00000531110	MOGAT3	Q86VF5	341 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	METTL23	Q86XA0	190 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	APCDD1	Q8J025	514 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	MMP21	Q8N119	569 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	ARRDC1	Q8N5I2	433 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	BHLHE23	Q8NDY6	225 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	OR7A2P	Q8NGA2	310 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	OR13J1	Q8NGT2	312 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	PIH1D2	Q8WWB5	315 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	TM4SF18	Q96CE8	201 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	CDKN2AIPNL	Q96HQ2	116 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	PPP1R36	Q96LQ0	422 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	RNF157	Q96PX1	679 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	EBNA1BP2	Q99848	306 aa	Known RBP	5.2	□□□□□ -1.58
CD44-231	ENST00000531110	PKP2	Q99959	881 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	NLN	Q9BYT8	704 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	SPRTN	Q9H040	489 aa	Predicted RBP	5.2	□□□□□ -1.58
CD44-231	ENST00000531110	DYRK4	Q9NR20	520 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	EIF2B3	Q9NR50	452 aa	Known RBP	5.2	□□□□□ -1.58
CD44-231	ENST00000531110	TBC1D13	Q9NVG8	400 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	NLE1	Q9NVX2	485 aa	Predicted RBP	5.2	□□□□□ -1.58
CD44-231	ENST00000531110	FBXL12	Q9NXK8	326 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	TAB2	Q9NYJ8	693 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	RDH8	Q9NYR8	311 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	GTSE1	Q9NYZ3	720 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	RNF7	Q9UBF6	113 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	LRWD1	Q9UFC0	647 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	ARMCX3	Q9UH62	379 aa	Predicted RBP	5.2	□□□□□ -1.58
CD44-231	ENST00000531110	ING4	Q9UNL4	249 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	LAMP3	Q9UQV4	416 aa		5.2	□□□□□ -1.58
CD44-231	ENST00000531110	PADI2	Q9Y2J8	665 aa		5.2	□□□□□ -1.58

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