RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TIGD3Q6B0B8 471 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 NIPAL3Q6P499 406 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 SLC38A6Q8IZM9 456 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 LRRC25Q8N386 305 aaPredicted RBP17.92■□□□□ 0.46
VPS28-213ENST00000530983 OR5H6Q8NGV6 325 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 ARMC5Q96C12 935 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 ART5Q96L15 291 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 DPH1Q9BZG8 443 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 OR52D1Q9H346 318 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 SYNDIG1Q9H7V2 258 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 LINC01553A4QN01 128 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 HRO43593 1189 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 TRIM3O75382 744 aaPredicted RBP17.92■□□□□ 0.46
VPS28-213ENST00000530983 RGS9O75916 674 aaPredicted RBP17.92■□□□□ 0.46
VPS28-213ENST00000530983 RNF144AP50876 292 aaPredicted RBP17.92■□□□□ 0.46
VPS28-213ENST00000530983 EEF1A1P68104 462 aaKnown RBP17.92■□□□□ 0.46
VPS28-213ENST00000530983 DUSP5Q16690 384 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 VITQ6UXI7 678 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 WDR88Q6ZMY6 472 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 MTSS1LQ765P7 747 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 GID4Q8IVV7 300 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 ACBD7Q8N6N7 88 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 BRIX1Q8TDN6 353 aaKnown RBP17.92■□□□□ 0.46
VPS28-213ENST00000530983 GAL3ST3Q96A11 431 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 NECTIN4Q96NY8 510 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 HCAR1Q9BXC0 346 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 ENKD1Q9H0I2 346 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 PTGFRNQ9P2B2 879 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 ADAM30Q9UKF2 790 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 TBC1D3KA0A087X1G2 549 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 TBC1D3FA6NER0 549 aaPredicted RBP17.91■□□□□ 0.46
VPS28-213ENST00000530983 PRG2P13727 222 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 ERP29P30040 261 aaKnown RBP17.91■□□□□ 0.46
VPS28-213ENST00000530983 MTNR1BP49286 362 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 ARHGAP11BQ3KRB8 267 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 CCNJQ5T5M9 372 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 TBC1D3GQ6DHY5 549 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 PAQR7Q86WK9 346 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 OR2L13Q8N349 312 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 TMEM99Q8N816 258 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 NACC2Q96BF6 587 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 TBX5Q99593 518 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 ALG8Q9BVK2 526 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 C1QTNF2Q9BXJ5 285 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 PPIL3Q9H2H8 161 aaKnown RBP17.91■□□□□ 0.46
VPS28-213ENST00000530983 BABAM2Q9NXR7 383 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 ZNF223Q9UK11 482 aaPredicted RBP17.91■□□□□ 0.46
VPS28-213ENST00000530983 ATG2BQ96BY7 2078 aa17.91■□□□□ 0.46
VPS28-213ENST00000530983 UNC119BA6NIH7 251 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 BTN3A3O00478 584 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 PAICSP22234 425 aaKnown RBP17.9■□□□□ 0.46
VPS28-213ENST00000530983 FCARP24071 287 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 IGFALSP35858 605 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 TNFRSF17Q02223 184 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 CSTF1Q05048 431 aaKnown RBP17.9■□□□□ 0.46
VPS28-213ENST00000530983 ADAM15Q13444 863 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 OR4N5Q8IXE1 308 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 FAM109AQ8N4B1 249 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 OR4M2Q8NGB6 313 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 ACOT12Q8WYK0 555 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 KISS1RQ969F8 398 aaPredicted RBP17.9■□□□□ 0.46
VPS28-213ENST00000530983 KCNN2Q9H2S1 579 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 C20orf141Q9NUB4 165 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 EXTL2Q9UBQ6 330 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 BHLHE40O14503 412 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 SLC43A1O75387 559 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 AGR2O95994 175 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 MAKP20794 623 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 C5AR1P21730 350 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 HTR2AP28223 471 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 GZMKP49863 264 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 DUSP8Q13202 625 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 MAPK14Q16539 360 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 IDNKQ5T6J7 187 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 PSRC1Q6PGN9 363 aaPredicted RBP17.9■□□□□ 0.46
VPS28-213ENST00000530983 MEPCEQ7L2J0 689 aaKnown RBP17.9■□□□□ 0.46
VPS28-213ENST00000530983 ADGRD2Q7Z7M1 963 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 OR4E2Q8NGC2 313 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 OR4M1Q8NGD0 313 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 PFN4Q8NHR9 129 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 FANK1Q8TC84 345 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 UBL7Q96S82 380 aaPredicted RBP17.9■□□□□ 0.46
VPS28-213ENST00000530983 SDF2Q99470 211 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 WACQ9BTA9 647 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 TRAF4Q9BUZ4 470 aaPredicted RBP17.9■□□□□ 0.46
VPS28-213ENST00000530983 KIR3DX1Q9H7L2 352 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 KRCC1Q9NPI7 259 aaPredicted RBP17.9■□□□□ 0.46
VPS28-213ENST00000530983 SIDT1Q9NXL6 827 aaKnown RBP17.9■□□□□ 0.46
VPS28-213ENST00000530983 STMN3Q9NZ72 180 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 KCMF1Q9P0J7 381 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 REV3LO60673 3130 aa17.9■□□□□ 0.46
VPS28-213ENST00000530983 KIAA0100Q14667 2235 aaKnown RBP17.9■□□□□ 0.46
VPS28-213ENST00000530983 AKR7A2O43488 359 aa17.89■□□□□ 0.46
VPS28-213ENST00000530983 ADH1BP00325 375 aa17.89■□□□□ 0.46
VPS28-213ENST00000530983 ARSBP15848 533 aa17.89■□□□□ 0.46
VPS28-213ENST00000530983 TBXA2RP21731 343 aa17.89■□□□□ 0.46
VPS28-213ENST00000530983 INPP1P49441 399 aa17.89■□□□□ 0.46
VPS28-213ENST00000530983 AGFG1P52594 562 aaKnown RBP17.89■□□□□ 0.46
VPS28-213ENST00000530983 SGCGQ13326 291 aa17.89■□□□□ 0.46
VPS28-213ENST00000530983 GPR68Q15743 365 aa17.89■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms