RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 COX18Q8N8Q8 333 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 CHDHQ8NE62 594 aaPredicted RBP9.6□□□□□ -0.87
CD44-227ENST00000528086 MIPOL1Q8TD10 442 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 ZNF75CPQ92670 426 aaPredicted RBP9.6□□□□□ -0.87
CD44-227ENST00000528086 NRGNQ92686 78 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 ZG16BQ96DA0 208 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 MARK4Q96L34 752 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 OR52B2Q96RD2 323 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 SDF2Q99470 211 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 TBL1XR1Q9BZK7 514 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 DPY30Q9C005 99 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 MCCC2Q9HCC0 563 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 UBQLN4Q9NRR5 601 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 THAP1Q9NVV9 213 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 ZNF629Q9UEG4 869 aaPredicted RBP9.6□□□□□ -0.87
CD44-227ENST00000528086 A0A1W2PQD3 144 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 H0Y3Z8 333 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 HDAC3O15379 428 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 ADAM11O75078 769 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 SASH3O75995 380 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 AQP8O94778 261 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 SNUPNO95149 360 aaKnown RBP9.59□□□□□ -0.87
CD44-227ENST00000528086 NTN1O95631 604 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 IL18BPO95998 194 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 OPN1LWP04000 364 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 KITP10721 976 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 H2AFXP16104 143 aaPredicted RBP9.59□□□□□ -0.87
CD44-227ENST00000528086 CTSSP25774 331 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 KIR2DL2P43627 348 aaPredicted RBP9.59□□□□□ -0.87
CD44-227ENST00000528086 MVDP53602 400 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 MAD2L1Q13257 205 aaPredicted RBP9.59□□□□□ -0.87
CD44-227ENST00000528086 LSM12Q3MHD2 195 aaKnown RBP9.59□□□□□ -0.87
CD44-227ENST00000528086 FAM174BQ3ZCQ3 159 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 GLYR1Q49A26 553 aaPredicted RBP9.59□□□□□ -0.87
CD44-227ENST00000528086 VPS26BQ4G0F5 336 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 RAET1LQ5VY80 246 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 SAXO2Q658L1 398 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 VWA1Q6PCB0 445 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 UBQLNLQ8IYU4 475 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 OR56A1Q8NGH5 318 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 GOT1L1Q8NHS2 421 aaPredicted RBP9.59□□□□□ -0.87
CD44-227ENST00000528086 JADE3Q92613 823 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 WNT2BQ93097 391 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 INTS12Q96CB8 462 aaKnown RBP9.59□□□□□ -0.87
CD44-227ENST00000528086 STARD4Q96DR4 205 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 SH3YL1Q96HL8 342 aaPredicted RBP9.59□□□□□ -0.87
CD44-227ENST00000528086 CCDC115Q96NT0 180 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 RSPO3Q9BXY4 272 aaPredicted RBP9.59□□□□□ -0.87
CD44-227ENST00000528086 MANSC1Q9H8J5 431 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 SLCO1B3Q9NPD5 702 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 MED17Q9NVC6 651 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 ATAD3AQ9NVI7 634 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 CRIM1Q9NZV1 1036 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 ICAM5Q9UMF0 924 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 VDAC3Q9Y277 283 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 F8P00451 2351 aa9.59□□□□□ -0.87
CD44-227ENST00000528086 A0A0J9YW62 118 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 RNF103-CHMP3A0A140T963 221 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 PRSS51A0A1B0GVH4 220 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 A0A1W2PNV4 684 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 A0A1W2PPR1 153 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 C7orf72A4D263 438 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 E9PBE3 544 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 H3BML4 177 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 KLF11O14901 512 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 CFLARO15519 480 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 NDUFB5O43674 189 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 DNAJA2O60884 412 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 TNFRSF21O75509 655 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 CPSF4O95639 269 aaKnown RBP9.58□□□□□ -0.88
CD44-227ENST00000528086 CGAP01215 116 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 IL2RAP01589 272 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 TMIGD3P0DMS9 266 aaPredicted RBP9.58□□□□□ -0.88
CD44-227ENST00000528086 PEPDP12955 493 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 HOXB9P17482 250 aaPredicted RBP9.58□□□□□ -0.88
CD44-227ENST00000528086 MATN1P21941 496 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 SSTR2P30874 369 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 LCN1P31025 176 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 OPRM1P35372 400 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 ASCL1P50553 236 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 PSMD4P55036 377 aaKnown RBP9.58□□□□□ -0.88
CD44-227ENST00000528086 GANABQ14697 944 aaKnown RBP9.58□□□□□ -0.88
CD44-227ENST00000528086 TESK1Q15569 626 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 AAGABQ6PD74 315 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 ENPP6Q6UWR7 440 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 C22orf34Q6ZV56 151 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 BTLAQ7Z6A9 289 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 HMGN2P46Q86SG4 172 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 GTPBP8Q8N3Z3 284 aaPredicted RBP9.58□□□□□ -0.88
CD44-227ENST00000528086 NATD1Q8N6N6 113 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 METTL25Q8N6Q8 603 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 OR4A15Q8NGL6 344 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 OR9I1Q8NGQ6 314 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 FNDC9Q8TBE3 224 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 GPR119Q8TDV5 335 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 ACTRT2Q8TDY3 377 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 RAB8BQ92930 207 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 RNASE6Q93091 150 aaKnown RBP9.58□□□□□ -0.88
CD44-227ENST00000528086 ZNF350Q9GZX5 532 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 OR51I1Q9H343 314 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms