RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 JKAMPQ9P055 326 aa18.62■□□□□ 0.57
VPS28-206ENST00000526734 ZNF337Q9Y3M9 751 aa18.62■□□□□ 0.57
VPS28-206ENST00000526734 ADGRG4Q8IZF6 3080 aa18.62■□□□□ 0.57
VPS28-206ENST00000526734 SLC22A20A6NK97 555 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 SCN2BO60939 215 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 FCGR2AP12318 317 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 MATN1P21941 496 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 UQCRC2P22695 453 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 UQCRC1P31930 480 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 ATP12AP54707 1039 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 DLX5P56178 289 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 TXNL4AP83876 142 aaKnown RBP18.61■□□□□ 0.57
VPS28-206ENST00000526734 SORDQ00796 357 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 FGFBP1Q14512 234 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 FLYWCH1Q4VC44 716 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 KLHL26Q53HC5 615 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 UBQLNLQ8IYU4 475 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 GLB1L3Q8NCI6 653 aaPredicted RBP18.61■□□□□ 0.57
VPS28-206ENST00000526734 B4GALNT2Q8NHY0 566 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 ZBTB18Q99592 522 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 BTNL2Q9UIR0 455 aa18.61■□□□□ 0.57
VPS28-206ENST00000526734 APCP25054 2843 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 INTS1Q8N201 2190 aaKnown RBP18.6■□□□□ 0.57
VPS28-206ENST00000526734 EEF1E1-BLOC1S5C9J1V9 151 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 NPIPB9F8W1W9 429 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 H3BML4 177 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 EEF1E1O43324 174 aaKnown RBP18.6■□□□□ 0.57
VPS28-206ENST00000526734 GUSBP08236 651 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 ALDOCP09972 364 aaKnown RBP18.6■□□□□ 0.57
VPS28-206ENST00000526734 IDO1P14902 403 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 EIF1P41567 113 aaKnown RBP18.6■□□□□ 0.57
VPS28-206ENST00000526734 KIR2DL3P43628 341 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 FAM174BQ3ZCQ3 159 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 SPANXN4Q5MJ08 99 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 WDR75Q8IWA0 830 aaKnown RBP18.6■□□□□ 0.57
VPS28-206ENST00000526734 METTL25Q8N6Q8 603 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 TRIML2Q8N7C3 387 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 GATSQ8NAP1 163 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 PIWIL2Q8TC59 973 aaKnown RBP18.6■□□□□ 0.57
VPS28-206ENST00000526734 MAELQ96JY0 434 aaKnown RBP18.6■□□□□ 0.57
VPS28-206ENST00000526734 CCDC115Q96NT0 180 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 NMUR2Q9GZQ4 415 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 POLE3Q9NRF9 147 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 MED17Q9NVC6 651 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 MARCOQ9UEW3 520 aaPredicted RBP18.6■□□□□ 0.57
VPS28-206ENST00000526734 VDAC3Q9Y277 283 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 CREBBPQ92793 2442 aa18.6■□□□□ 0.57
VPS28-206ENST00000526734 MYO9AB2RTY4 2548 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 STX11O75558 287 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 ME2P23368 584 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 ELK4P28324 431 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 EPHA3P29320 983 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 ANXA11P50995 505 aaKnown RBP18.59■□□□□ 0.57
VPS28-206ENST00000526734 CD226Q15762 336 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 PLPPR5Q32ZL2 321 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 ATAD3BQ5T9A4 648 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 OR5D16Q8NGK9 328 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 PHOSPHO1Q8TCT1 267 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 FAM222BQ8WU58 562 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 INTS12Q96CB8 462 aaKnown RBP18.59■□□□□ 0.57
VPS28-206ENST00000526734 SDF2Q99470 211 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 ARGLU1Q9NWB6 273 aaPredicted RBP18.59■□□□□ 0.57
VPS28-206ENST00000526734 PACSIN3Q9UKS6 424 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 DTNAQ9Y4J8 743 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 GPR45Q9Y5Y3 372 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 KCNE3Q9Y6H6 103 aa18.59■□□□□ 0.57
VPS28-206ENST00000526734 SEC14L5O43304 696 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 EIF4E2O60573 245 aaKnown RBP18.58■□□□□ 0.56
VPS28-206ENST00000526734 GOSR1O95249 250 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 CPSF4O95639 269 aaKnown RBP18.58■□□□□ 0.56
VPS28-206ENST00000526734 KITP10721 976 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 PCYT1AP49585 367 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 KHKP50053 298 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 P2RX1P51575 399 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 RAC1P63000 192 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 PHC1P78364 1004 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 GSTA3Q16772 222 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 ARHGAP11BQ3KRB8 267 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 SAXO2Q658L1 398 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 C16orf62Q7Z3J2 963 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 ANKRD46Q86W74 232 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 TOR1AIP2Q8NFQ8 470 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 ZNF75CPQ92670 426 aaPredicted RBP18.58■□□□□ 0.56
VPS28-206ENST00000526734 NEURL3Q96EH8 262 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 SH3YL1Q96HL8 342 aaPredicted RBP18.58■□□□□ 0.56
VPS28-206ENST00000526734 ATP6V1G3Q96LB4 118 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 PINK1Q9BXM7 581 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 SERHL2Q9H4I8 314 aa18.58■□□□□ 0.56
VPS28-206ENST00000526734 WDR55Q9H6Y2 383 aaPredicted RBP18.58■□□□□ 0.56
VPS28-206ENST00000526734 MED12Q93074 2177 aa18.57■□□□□ 0.56
VPS28-206ENST00000526734 GOLGA8QA0A0J9YX86 632 aa18.57■□□□□ 0.56
VPS28-206ENST00000526734 A0A1W2PNV4 684 aa18.57■□□□□ 0.56
VPS28-206ENST00000526734 GOLGA8OA6NCC3 632 aa18.57■□□□□ 0.56
VPS28-206ENST00000526734 GOLGA8NF8WBI6 632 aa18.57■□□□□ 0.56
VPS28-206ENST00000526734 GTPBP1O00178 669 aaKnown RBP18.57■□□□□ 0.56
VPS28-206ENST00000526734 GMFGO60234 142 aa18.57■□□□□ 0.56
VPS28-206ENST00000526734 TGM6O95932 706 aa18.57■□□□□ 0.56
VPS28-206ENST00000526734 PGRP06401 933 aa18.57■□□□□ 0.56
VPS28-206ENST00000526734 ADH6P28332 368 aa18.57■□□□□ 0.56
VPS28-206ENST00000526734 CHI3L1P36222 383 aaPredicted RBP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms