RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 MTHFD2LQ9H903 347 aaPredicted RBP12.54□□□□□ -0.4
CD44-224ENST00000526669 CACYBPQ9HB71 228 aaKnown RBP12.54□□□□□ -0.4
CD44-224ENST00000526669 PPP4R1LQ9P1A2 415 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 SEC14L3Q9UDX4 400 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 DTNAQ9Y4J8 743 aa12.54□□□□□ -0.4
CD44-224ENST00000526669 GPC6Q9Y625 555 aaPredicted RBP12.54□□□□□ -0.4
CD44-224ENST00000526669 SERINC4A6NH21 518 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 AGAP5A6NIR3 686 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 ALG1L2C9J202 215 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 M0QX08 132 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 GTPBP1O00178 669 aaKnown RBP12.53□□□□□ -0.4
CD44-224ENST00000526669 CDK2AP1O14519 115 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 ARPC2O15144 300 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 FRS3O43559 492 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 NDUFB5O43674 189 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 PDE9AO76083 593 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 DBIP07108 87 aaKnown RBP12.53□□□□□ -0.4
CD44-224ENST00000526669 NGFRP08138 427 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 GUSBP08236 651 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 PABPC4LP0CB38 370 aaKnown RBP12.53□□□□□ -0.4
CD44-224ENST00000526669 ETS2P15036 469 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 GGT1P19440 569 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 TCEA1P23193 301 aaKnown RBP12.53□□□□□ -0.4
CD44-224ENST00000526669 ME2P23368 584 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 VEZF1Q14119 521 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 FGFBP1Q14512 234 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 GLIPR1L2Q4G1C9 344 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 LIN52Q52LA3 116 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 KLHL26Q53HC5 615 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 ZNF311Q5JNZ3 666 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 FNDC7Q5VTL7 733 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 GLYATQ6IB77 296 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 SLC30A6Q6NXT4 461 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 PATL1Q86TB9 770 aaKnown RBP12.53□□□□□ -0.4
CD44-224ENST00000526669 LSRQ86X29 649 aaPredicted RBP12.53□□□□□ -0.4
CD44-224ENST00000526669 KRT73Q86Y46 540 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 ARMC8Q8IUR7 673 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 TMCO5AQ8N6Q1 288 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 TNIP2Q8NFZ5 429 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 OR10Q1Q8NGQ4 319 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 SLC26A7Q8TE54 656 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 DUSP19Q8WTR2 217 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 ZNF597Q96LX8 424 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 KLHDC3Q9BQ90 382 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.53□□□□□ -0.4
CD44-224ENST00000526669 RYDENQ9NUL5 291 aaKnown RBP12.53□□□□□ -0.4
CD44-224ENST00000526669 MED11Q9P086 117 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 SUCOQ9UBS9 1254 aaKnown RBP12.53□□□□□ -0.4
CD44-224ENST00000526669 CARD8Q9Y2G2 431 aa12.53□□□□□ -0.4
CD44-224ENST00000526669 A0A1W2PQD3 144 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 FAM166BA8MTA8 275 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 B4DXG7 233 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 SNPHO15079 494 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 TPST1O60507 370 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 CSTAP01040 98 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 UBTFL6P0CB48 400 aaPredicted RBP12.52□□□□□ -0.41
CD44-224ENST00000526669 UBL4AP11441 157 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 ATP6V1B2P21281 511 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 KDELR2P33947 212 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 CCR4P51679 360 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 CRYBA2P53672 197 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 KCNJ10P78508 379 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 PLGLB1Q02325 96 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 PLAURQ03405 335 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 ZNF117Q03924 483 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 LARS2Q15031 903 aaKnown RBP12.52□□□□□ -0.41
CD44-224ENST00000526669 MRPL2Q5T653 305 aaKnown RBP12.52□□□□□ -0.41
CD44-224ENST00000526669 TMEM81Q6P7N7 255 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 CYP2R1Q6VVX0 501 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 CCDC80Q76M96 950 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 ASRGL1Q7L266 308 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 COMTD1Q86VU5 262 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 ULK2Q8IYT8 1036 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 ARHGAP24Q8N264 748 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 CLIP4Q8N3C7 705 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 TEX19Q8NA77 164 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 CNOT9Q92600 299 aaKnown RBP12.52□□□□□ -0.41
CD44-224ENST00000526669 FAM173AQ9BQD7 235 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 DSN1Q9H410 356 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 RLIMQ9NVW2 624 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 B3GNT3Q9Y2A9 372 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 IFT52Q9Y366 437 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 CHST2Q9Y4C5 530 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 SNX13Q9Y5W8 968 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 V9GYQ6 96 aa12.52□□□□□ -0.41
CD44-224ENST00000526669 SPENQ96T58 3664 aaKnown RBP12.51□□□□□ -0.41
CD44-224ENST00000526669 ARHGAP21Q5T5U3 1957 aa12.51□□□□□ -0.41
CD44-224ENST00000526669 ANKRD33BA6NCL7 494 aa12.51□□□□□ -0.41
CD44-224ENST00000526669 LRRC3CA6NJW4 275 aa12.51□□□□□ -0.41
CD44-224ENST00000526669 H3BNH8 94 aa12.51□□□□□ -0.41
CD44-224ENST00000526669 KLRC4-KLRK1H3BQV0 150 aa12.51□□□□□ -0.41
CD44-224ENST00000526669 HCRTR2O43614 444 aa12.51□□□□□ -0.41
CD44-224ENST00000526669 CDC40O60508 579 aaKnown RBP eCLIP12.51□□□□□ -0.41
CD44-224ENST00000526669 TRIM3O75382 744 aaPredicted RBP12.51□□□□□ -0.41
CD44-224ENST00000526669 GMNNO75496 209 aa12.51□□□□□ -0.41
CD44-224ENST00000526669 SERPINB7O75635 380 aa12.51□□□□□ -0.41
CD44-224ENST00000526669 MFN2O95140 757 aa12.51□□□□□ -0.41
CD44-224ENST00000526669 ZNF682O95780 498 aa12.51□□□□□ -0.41
CD44-224ENST00000526669 SERPINA1P01009 418 aa12.51□□□□□ -0.41
CD44-224ENST00000526669 GKN3PP0CG01 181 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms